1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGGCTATAAAATCGTATGCAATGGGGGAATTGGAAGCGAGGAAGCTCAAGTATCCAAACACGGGAACCGAGGCACTTCTCATGGGGATTTTGGTTGAAGgtttgttagttgcaatcacaatttggtgtctttttaatttcagtaatagccatgaaaaccagtgcttctatcgtaagagaaaaacaaagaagaagaaaat...
species | Glycine max |
transcript | GLYMA09G28050.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTATCCAAACACGGGAACCGAGGCACTTCTCATGGGGATTTTGGTTGAAG GAACAAGTAAAGCTGCAAAATTCTCAAGAGCTAATGGAATTACTCTTTTCAEST: gi|21889780|gb|BQ742993.1|BQ742993
genomic: GTATCCAAACACGGGAACCGAGGCACTTCTCATGGGGATTTTGGTTGAAGgtttgttagt ... tccctttcagGAACAAGTAAAGCTGCAAAATTCTCAAGAGCTAATGGAATTACTCTTTTCA
EST: GTATCCAAACACGGGAACCGAGGCACTTCTCATGGGGATTTTGGTTGAAG GAACAAGTAAAGCTGCAAAATTCTTAAGAGCTAATGGAATTACTCTTTTCAEST: gi|8827618|gb|BE211348.1|BE211348
genomic: GTATCCAAACACGGGAACCGAGGCACTTCTCATGGGGATTTTGGTTGAAGgtttgttagt ... tccctttcagGAACAAGTAAAGCTGCAAAATTCTCAAGAGCTAATGGAATTACTCTTTTCA
EST: GTATCCAAACACGGGAACCGAGGCACTTCTCATGGGGATTTTGGTTGAAG GAACAAGTAAAGCTGCAAAATTCTCAAGAGCTAATGGAATTACTCTTTTCA
genomic: GTATCCAAACACGGGAACCGAGGCACTTCTCATGGGGATTTTGGTTGAAGgtttgttagt ... tccctttcagGAACAAGTAAAGCTGCAAAATTCTCAAGAGCTAATGGAATTACTCTTTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGCTATAAAATCGTATGCAATGGGGGAATTGGAAGCGAGGAAGCTCAAGTATCCAAACACGGGAACCGAGGCACTTCTCATGGGGATTTTGGTTGAAGgtttgttagttgcaatcacaatttggtgtctttttaatttcagtaatagccatgaaaaccagtgcttctatcgtaagagaaaaacaaagaagaagaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaaaa