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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACAAAGTGGAGAGACACCTCCAGTGGGCAGCATGTTGAATATGATCAACGTCCTGATATGTTTAGgttaccttttttctttccttttgatttttctcttaaattctacttgtttctattattatggtttttgttgttttatgttcatggttatcatttatccatctgcttcagtcttatatttttaatttttgcag

Basic information

species Glycine max
transcript GLYMA08G47680.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G47680.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G017835_T03 (Zea mays), 5'ss of exon 8
CAACAAAGTGGAGAGACACCTCCAGTGGGCAGCATGTTGAATATGATCAACGTCCTGATATGTTTAGgttaccttttttctttccttttgatttttctcttaaattctacttgtttctatta-ttatggtttttgttgttttatgttcatggttatcatttatccatctgcttcagtcttatatttttaatttttgcag
|||||||||||||||| ||  | | |||||||||||||   ||||||||||||||||||   ||||||||  |   ||| | ||||    || ||||   |||  |  |  | | |||| || |||||   || |||    ||||| ||   || ||  ||  |    |  |  ||                       
CAACAAAGTGGAGAGATACTGCTAATGGGCAGCATGTTAGTTATGATCAACGTCCTGATGCCTTTAGgtttgccactttgtctcct----atatttcatataatattcatatctgtctactagttatgacattagtt---ctatgtccaaacttctctcttgccttcataatctag-----------------------

upper sequence: GLYMA08G47680.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 8
CAACAAAGTGGAGAGACACCTCCAGTGGGCAGCATGTTGAATATGATCAACGTCCTGATATGTTTAGgttaccttttttct-----ttccttttgatttttctcttaaattctacttgtttctattattatggtttttgttgttttatgttcatggttatcatttatccatctgcttcagtcttatatttttaatttttgcag
| ||||||||||||||       || || || ||||||||||||||||||||||||||||||||||||| |  | ||||||     | |||  |    ||| | ||| | ||  ||  |  || || ||     | |   |  || || || || |                                               
CTACAAAGTGGAGAGAAGGTGGTAGCGGACAACATGTTGAATATGATCAACGTCCTGATATGTTTAGgtaatatattttctactgttacctaatataatttgttttatactc-gctcttaccttttgttgaatctctctcttcttaatttttatag-----------------------------------------------

upper sequence: GLYMA08G47680.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 8
CAACAAAGTGGAGAGACACCTCCAGTGGGCAGCATGTTGAATATGATCAACGTCCTGATATGTTTAGgttaccttttttctttccttttgatttttctcttaaattctacttgtttctattattatggtttttgttgttttatgttcatggttatcatttatccatctgcttcagtcttatatttttaatttttgcag
||||||||||||| ||||   | | |||||||||||||||||||||||| || |||||||||||||||| |  |  | |  |   | | |    | || |   |||    |||    ||||        |||| |  |  |   ||| || ||||  |||  |  | |||||||  |                     
CAACAAAGTGGAGGGACAGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAGgtgaattgatgttgtgtttgtgggccatgctttgtgattt---ttgaacttatt--------ttttttaatccttcattcttgattat--ttttactgtttgcttcatccag-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207760921|gb|GD731976.1|GD731976
EST:     ACCTCCAGTGGGCAGCATGTTGAATATGATCAACGCCCTGATATGTTTAG                         AGGGACTGTTCGATATGCCAGTGTTCATGCTCATTTGGGAAGAACTGCTAG
genomic: ACCTCCAGTGGGCAGCATGTTGAATATGATCAACGTCCTGATATGTTTAGgttacctttt ... atttttgcagAGGGACTGTTCGATATGCCAGTGTTCATGCTCATTTGGGAAGAACTGCTAG