1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aatggattctgtgttttctataatgctgctttattaaaaaggaagagagaattctggtttttatagttttttcatactcttacatgggctttctttttagGTTGCTCGAGGTGACAAGGCTGGTGGAGAAGCAATTCCTATGCTTTTGAGATTTCCTCGTCTTTTTGATCCCTGGGGAGGTTATGACATGATTGGATTTG
species | Glycine max |
transcript | GLYMA08G47600.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGTTATGATTGCC GTTGCTCGAGGTGACAAGGCTGGTGGAGAAGCAATTCCTATGCTTTTGAGAEST: gi|208179209|gb|GD974542.1|GD974542
genomic: TGTTATGATTGCCgtaagtattt ... ttctttttagGTTGCTCGAGGTGACAAGGCTGGTGGAGAAGCAATTCCTATGCTTTTGAGA
EST: AGTGTTATGATTGCC GTTGCTCGAGGTGACAAGGCTGGTGGAGAAGCAATTCCTATGCTTTTGAGAEST: gi|14125091|gb|BG789529.1|BG789529
genomic: AGTGTTATGATTGCCgtaagtattt ... ttctttttagGTTGCTCGAGGTGACAAGGCTGGTGGAGAAGCAATTCCTATGCTTTTGAGA
EST: TTTGGGTATTCATATCTCCAGTGATTTTCCACGAGAGTGTTATGATTGCC GTTGCTCGAGGTGACAAGGCTGGTGGAGAAGCAATTCCTATGCTTTTGAGAEST: gi|208174456|gb|GD968165.1|GD968165
genomic: TTTGGGTATTCATATCTCCAGTGATTTTCCACGAGAGTGTTATGATTGCCgtaagtattt ... ttctttttagGTTGCTCGAGGTGACAAGGCTGGTGGAGAAGCAATTCCTATGCTTTTGAGA
EST: AGTGTTATGATTGCC GTTGCTCGAGGTGACAAGGCTGGTGGAGAAGCAATTCCTATGCTTTTGAGAEST: gi|9204399|gb|BE330623.1|BE330623
genomic: AGTGTTATGATTGCCgtaagtattt ... ttctttttagGTTGCTCGAGGTGACAAGGCTGGTGGAGAAGCAATTCCTATGCTTTTGAGA
EST: TTTGGGTATTCATATCTCCAGTGATTTTCCACGAGAGTGTTATGATTGCC GTTGCTCGAGGTGACAAGGCTGGTGGAGAAGCAATGCCTATGCTTTTGAGAEST: gi|7925333|gb|AW831420.1|AW831420
genomic: TTTGGGTATTCATATCTCCAGTGATTTTCCACGAGAGTGTTATGATTGCCgtaagtattt ... ttctttttagGTTGCTCGAGGTGACAAGGCTGGTGGAGAAGCAATTCCTATGCTTTTGAGA
EST: TTTGGGTATTCATATCTCCAGTGATTTTCCACGAGAGTGTTATGATTGCC GTTGCTCGAAGTGACAAGGCTGGTGGAGAAGCAATTCCTATGCTTTTGAGAEST: gi|16996199|gb|BM085571.1|BM085571
genomic: TTTGGGTATTCATATCTCCAGTGATTTTCCACGAGAGTGTTATGATTGCCgtaagtattt ... ttctttttagGTTGCTCGAGGTGACAAGGCTGGTGGAGAAGCAATTCCTATGCTTTTGAGA
EST: TTTGGGTATTCATATCTCCAGTGATTTTCCACGAGAGTGTTATGATTGCC GTTGCTCGAGGTGACAAGGCTGGTGGAGAAGCAATTCCTATGCTTTTGAGA
genomic: TTTGGGTATTCATATCTCCAGTGATTTTCCACGAGAGTGTTATGATTGCCgtaagtattt ... ttctttttagGTTGCTCGAGGTGACAAGGCTGGTGGAGAAGCAATTCCTATGCTTTTGAGA
agagaattctggtttttatagttttttcatactcttacatgggctttctttttagGTTGCTCGAGGTGACAAGGCTGGTGGAGAAGCAATTCCTATGCTTTTGAGATTTCCTCGTCTTTTTGATCCCTGGGGAGGTTATGACATGATTGGATTTG
ctcttac putative branch site (score: 3)
ctttcttttt putative PPT
tttttatagttttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatggattctgtgttttctataatgctgctttattaaaaaggaagagagaattctggtttttatagttttttcatactcttacatgggctttctttttagGTTGCTCGAGGTGACAAGGCTGGTGGAGAAGCAATTCCTATGCTTTTGAGATTTCCTCGTCTTTTTGATCCCTGGGGAGGTTATGACATGATTGGATTTG
- - gattctg
- - - - - - - - - - - atgctgc
- - - - - - - - - - - - - - - - attaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - tctggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatggg