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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTGTGATCTTGATGGAAGCAAGGGCATACAGTTCAATGAGTTTATAGTTCTTCTATGCCTCATCCATCTCCTAGCAGAACCTTCATCCTCTGATATTgtactcatcagaaacttaatgttatgctttcttgatcttgaaattgatatatctgcttaaagtctgtaatcactataatgattatatttcttttctcag

Basic information

species Glycine max
transcript GLYMA08G45410.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G45410.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G24110.1 (Arabidopsis thaliana), 5'ss of exon 2
GTACTGTGATCTTGATGGAAGCAAGGGCATACAGTTCAATGAGTTTATAGTTCTTCTATGCCTCATCCATCTCCTAGCAGAACCTTCATCC---TCTGATATTgtactcatcagaaacttaatgttatgctttcttgatcttgaaattgatatatctgcttaaagtctgtaatcactataatgattatatttcttttctcag
    |||||  ||||||||||||| || ||||| ||||||||||||||||| ||||| || |||||| |||| || ||  ||||||| ||    ||    |  ||| | |||||  || | ||| |     |  |   | || ||  | | |||| |  |     ||| ||                               
---GTGTGACGTTGATGGAAGCAAAGGGATACAATTCAATGAGTTTATAGTCCTTCTCTGTCTCATCTATCTTCTGGCGAAACCTTCCTCTGAATCCAGCACGgtaataatcagtgacatgatgatgaatatattgactatttaagctaaaatatgtagtgtgtttct-tag------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298166521|gb|HO009960.1|HO009960
EST:     TTCTTCTATGCCTCATCCATCTCCTAGCAGAACCTTCATCCTCTGATATT                         TCATCCAAAGCTGAGTTAGCACAGGTTGGAGAAATTTTTAATACCATAGTT
genomic: TTCTTCTATGCCTCATCCATCTCCTAGCAGAACCTTCATCCTCTGATATTgtactcatca ... cttttctcagTCATCCAAAGCTGAGTTAGCACAGGTTGGAGAAATTTTTAATACCATAGTT