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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCCAGGCTGAGATCAACCAGCTCCTCAGTCTCATCATCAACACCTTCTACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttcttcgtttttcgctccttgacttgttgtttctgcttgtttcgtgatgtgtttatgttcttcatccgattttattcaactaacatgctttatt...

Basic information

species Glycine max
transcript GLYMA08G44590.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G44590.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv00s0194g00030.t01 (Vitis vinifera), 5'ss of exon 1
TTTCCAGGCTGAGATCAACCAGCTCCTCAGTCTCATCATCAACACCTTCTACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttcttcgtttttcgctccttgacttgttgtttctg---cttgtttcgtgatgtgt-ttatgttcttcatccgattttattcaactaacatgctttatt
 |||||||| |||||||||||||| |||||||||||||||||||| |||||   ||||||||||||||||||||||||  ||||||||||  ||||||||||  ||||         |  |||||| |||| |  |||        || |       |||| ||  |    |     | |  || | |   ||   | ||    
ATTCCAGGCGGAGATCAACCAGCTGCTCAGTCTCATCATCAACACTTTCTATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttcagaacagtttctccttcacttctccttttaaggatctgatcgactgcgtgtgttgcgcgtatttcatgttcgtaatgatgcaatgcgatt----

upper sequence: GLYMA08G44590.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv19s0015g01090.t01 (Vitis vinifera), 5'ss of exon 1
TTTCCAGGCTGAGATCAACCAGCTCCTCAGTCTCATCATCAACACCTTCTACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttcttcgtttttcgctccttgacttgttgtttctgcttgtttcgtgatgtgtttatgttcttcatccgattttattcaactaacatgctttatt
||||||||||||||||||||| ||| | ||| | ||||||||||||||||||  ||||||||||||||| || ||||| |||||||||||  |||| |||||| ||    |  |||||  ||  ||   |  |  |||   |   |||  |   | | |  |||| |   | ||  |    |   ||    || ||||||
TTTCCAGGCTGAGATCAACCAACTCTTGAGTTTGATCATCAACACCTTCTACAGCAACAAGGAGATTTTTCTCCGTGAGCTCATCAGCAATTCCTCTGATgtaagtcctatactttttatctttttttttcctcatttaatcagtttttttttcgcgatcctgttttatttgcggctgatctgttctctgttggtttatt

upper sequence: GLYMA08G44590.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S220_79V6.1 (Physcomitrella patens), 5'ss of exon 1
TTTCCAGGCTGAGATCAACCAGCTCCTCAGTCTCATCATCAACACCTTCTACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttcttcgt-ttttcgc---tccttgacttgttgtttctgcttgtttcgtgatgtgtttatgttcttcatccgattttattcaactaacatgctttatt
 |||||||| |||||||||||| | || ||| | || |||||||| ||||||  ||||||||| |||||| |  | ||  | ||||| ||| | |||||||||  ||||||     ||| ||   | ||||| |  |||  ||   || |    |||| | |  | | ||    | || ||| | ||    ||        || 
CTTCCAGGCGGAGATCAACCAGTTGCTTAGTTTGATTATCAACACTTTCTACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGATgtaattttctttaaacttttgcaagttcttgaatatttgaatca--ttctcagttgatctatc-agggtcgcattgcgctttaagtctgagaattccagacat-

upper sequence: GLYMA08G44590.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S258_52V6.1 (Physcomitrella patens), 5'ss of exon 1
TTTCCAGGCTGAGATCAACCAGCTCCTCAGTCTCATCATCAACACCTTCTACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttcttcgtttttcgctccttgacttgttgtttctgcttgtttcgtgatgtgtttatgttcttcatccgattttattcaactaacatgctttatt--
 || ||||| || ||||| ||| | || ||| | ||||||||||||||||||  |||||||||||||||||| || ||||| ||||||||  | || |||||| ||      | |            |   | | ||  ||   |  | ||  ||         |||   ||   |      | | |  | || ||  |   
CTTTCAGGCGGAAATCAATCAGTTGCTGAGTTTGATCATCAACACCTTCTACAGCAACAAGGAGATTTTCCTGCGAGAACTTATCAGCAATTCTTCTGATgtaagtgctagtgctgacgaaagtcccatgcggtcttcttgtcgggattgtagtggccagtctatctgtgtcatgtgcacgccgatt--cttggttggtgca

upper sequence: GLYMA08G44590.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S291_62V6.1 (Physcomitrella patens), 5'ss of exon 1
TTTCCAGGCTGAGATCAACCAGCTCCTCAGTCTCATCATCAACACCTTCTACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgt-ttcttcgtttttcgctccttgacttgttgtttctgcttgtttcgtgatgtgtttatgttcttcatccgattttattcaactaacatgctttatt---
||||||||| |||||||| ||  |  | ||| | ||||| |||||||||||   |||||||||||||||| | || ||||||||||| ||  |||| |||||| || || ||      | |||  |  |||  |||| |||  | || ||    | | ||| |  | | |    || ||       |   | |      |    
TTTCCAGGCGGAGATCAATCAATTGTTGAGTTTGATCATTAACACCTTCTATAGCAACAAGGAGATTTTCTTGCGAGAACTCATCAGTAATTCCTCGGATgtaagtgttttttcacccttgcttgtgtactgtttgtgtctcatcgtgtc----tctatttgtcatttgcggtggagttggcgaggccggcgtttcccgtagag

upper sequence: GLYMA08G44590.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ25533 (Selaginella moellendorffii), 5'ss of exon 1
TTTCCAGGCTGAGATCAACCAGCTCCTCAGTCTCATCATCAACACCTTCTACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttcttcgtttttcgctccttgacttgttgtttctgcttgtttcgtgatgtgtttatgttcttcatccgattttattcaa---ctaacatgctttatt----------
 |||||||| |||||||||||||| |||||||||||||||||||||||||||  |||||||||||| ||| | || || ||||||||||| ||||| |||||  ||   || | |  ||| ||   ||  | ||  | ||  |    |||     | |||   |||||  | ||||||    |      |  ||| |||| |           
CTTCCAGGCGGAGATCAACCAGCTTCTCAGTCTCATCATCAACACCTTCTACAGCAACAAGGAGATCTTCTTGCGGGAGCTCATCAGCAATGCCTCGGATgtgagtg--ttagatgctcgttcggcgatattttactgctattctcatcg----atctttgccttctttctgcgatttctcaccgatctttgcattctttctgcgatttccag

upper sequence: GLYMA08G44590.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ29061 (Selaginella moellendorffii), 5'ss of exon 1
TTTCCAGGCTGAGATCAACCAGCTCCTCAGTCTCATCATCAACACCTTCTACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttcttcgtttttcgctccttgacttgttgtttctgcttgtttcgtgatgtgtttatgttcttcatccgattttattcaactaacatgctttatt
 ||||||||||||||||||||||| |||||||||||||||||||| ||||||  |||||||||||||||| | || || ||||||||||| ||||| |||||  || | |    |  | | || |  | || |||  ||    | |||| |  | |  |  ||  |  | |  || |  |                    
GTTCCAGGCTGAGATCAACCAGCTTCTCAGTCTCATCATCAACACTTTCTACAGCAACAAGGAGATTTTCTTGCGGGAGCTCATCAGCAATGCCTCGGATgtgagtatttcgcctccttgttcttccagttcttg--tcaaactctttcttcttctcatgctgcgccgc-tgtgactccag-------------------

upper sequence: GLYMA08G44590.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ22362 (Selaginella moellendorffii), 5'ss of exon 1
TTTCCAGGCTGAGATCAACCAGCTCCTCAGTCTCATCATCAACACCTTCTACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttcttcgtttttcgctccttgacttgttgtttctgcttgtttcgtgatgtgtttatgttcttcatccgattttat-tcaactaacatgctttatt------------
 |||||||| |||||||||||||| |||||||||||||||||||||||||||  |||||||||||| ||| | || || ||||||||||| ||||| |||||  ||   || | |  ||| ||   ||  | |   | |   |    |||     | |||   |||||  | ||||||     | |       | | | |             
CTTCCAGGCGGAGATCAACCAGCTTCTCAGTCTCATCATCAACACCTTCTACAGCAACAAGGAGATCTTCTTGCGGGAGCTCATCAGCAATGCCTCGGATgtgagtg--ttagatgctcgttcggcgatatttcactgcgattctcatcg----atctttgccttctttctgcgatttctcaccgatctttgcgttctttctgcgatttccag

upper sequence: GLYMA08G44590.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ17594 (Selaginella moellendorffii), 5'ss of exon 1
TTTCCAGGCTGAGATCAACCAGCTCCTCAGTCTCATCATCAACACCTTCTACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct----tcgtttttc-gctccttgacttgttgtttctgcttgtttcgtgatgtgtttatgtt-cttcatccgattttattcaactaacatgctttatt
 ||||||||||||||||||||||| |||||||||||||||||||| ||||||  |||||||||||||||| | || || ||||||||||| ||||| |||||  || | |    ||||| |||   | |||| |    | ||||| |||   || || || | |  |||  || ||                              
GTTCCAGGCTGAGATCAACCAGCTTCTCAGTCTCATCATCAACACTTTCTACAGCAACAAGGAGATTTTCTTGCGGGAGCTCATCAGCAATGCCTCGGATgtgagtatttcgcctcgttcttccagttcttgtcaaactctttcttctt--ctcatgctgcgctgctgtgactccag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193685332|gb|FK625792.1|FK625792
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAG
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAG
EST: gi|298170259|gb|HO018883.1|HO018883
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAGCGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|213593733|gb|DB971755.1|DB971755
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|213619460|gb|DB969439.1|DB969439
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|193517060|gb|FK476114.1|FK476114
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAG
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAG
EST: gi|209711577|gb|BW676822.1|BW676822
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|213611019|gb|DB970946.1|DB970946
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|209698590|gb|BW652430.1|BW652430
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|298181070|gb|HO022509.1|HO022509
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|207695615|gb|GD678566.1|GD678566
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|9987184|gb|BE661292.1|BE661292
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|208255913|gb|GE053606.1|GE053606
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGAT
EST: gi|298181415|gb|HO022854.1|HO022854
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|24206330|gb|BU965583.1|BU965583
EST:     TTTCTTACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: -CTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|213600196|gb|DB970258.1|DB970258
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|193556321|gb|FK514806.1|FK514806
EST:     ACTCCAACAAGGNGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAG
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAG
EST: gi|209705290|gb|BW678457.1|BW678457
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|48575038|gb|CO036203.1|CO036203
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|213616683|gb|DB971222.1|DB971222
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|208299791|gb|GE099234.1|GE099234
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTTGACAGATAAGAGCAAGCTCGA
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTT-GACAGATAAGAGCAAGCTCGA
EST: gi|192323768|gb|FK015594.1|FK015594
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGGTTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|298178040|gb|HO023889.1|HO023889
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|9987182|gb|BE661290.1|BE661290
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|208117082|gb|GD915868.1|GD915868
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|208269662|gb|GE073036.1|GE073036
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|6667333|gb|AW278784.1|AW278784
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|208295524|gb|GE092697.1|GE092697
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|193692449|gb|FK627624.1|FK627624
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAG
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAG
EST: gi|213591365|gb|DB955713.1|DB955713
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|213587826|gb|DB959650.1|DB959650
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
EST: gi|151407443|gb|EV277258.1|EV277258
EST:     ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGAT                         GCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT
genomic: ACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttct ... aacattgtagGCTTTGGACAAGATTCGATTTGAGAGTTTGACAGATAAGAGCAAGCTCGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTCCAGGCTGAGATCAACCAGCTCCTCAGTCTCATCATCAACACCTTCTACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttcttcgtttttcgctccttgacttgttgtttctgcttgtttcgtgatgtgtttatgttcttcatccgattttattcaactaacatgctttatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT