1 5' 3' | 2 5' 3' | 3 5' 3' |
TTTGGAAGAGGCCAAGAAGAAAATGTATGCGTGCAGCACAACAACTTACATAGGCTTTCAGGCAGTCATGACTGAAGAAGAGTCCAAGAAATTTGAAGgtatttatttgttcctactttcaaattccatgacccagtccagagaaaatcatttgatgtttgatttgctgcatcttaacag
species | Glycine max |
transcript | GLYMA08G20130.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CATAGGCTTTCAGGCAGTCATGACTGAAGAAGAGTCCAAGAAATTTGAAG GTCTTCCCGGAGTCGTCTTCGTGCTACCAGATTCCTATATTGATCCGGTGAEST: gi|213601414|gb|DB956706.1|DB956706
genomic: CATAGGCTTTCAGGCAGTCATGACTGAAGAAGAGTCCAAGAAATTTGAAGgtatttattt ... atcttaacagGTCTTCCCGGAGTCGTCTTCGTGCTACCAGATTCCTATATTGATCCGGTGA
EST: CATAGGCTTTCAGGCAGTCATGACTGAAGAAGAGTCCAAGAAATTTGAAG GTCTTCCCGGAGTCGTCTTCGTGCTACCAGATTCCTATATTGATCCGGTEST: gi|151410130|gb|EV279938.1|EV279938
genomic: CATAGGCTTTCAGGCAGTCATGACTGAAGAAGAGTCCAAGAAATTTGAAGgtatttattt ... atcttaacagGTCTTCCCGGAGTCGTCTTCGTGCTACCAGATTCCTATATTGATCCGGT
EST: CATAGGCTTTCAGGCAGTCATGACTGAAGAAGAGTCCAAGAAATTTGAAG GTCTTCCCGGAGTCGTCTTCGTGCTACCAGATTCCTATATTGATCCGGTGAEST: gi|14205425|gb|BG839103.1|BG839103
genomic: CATAGGCTTTCAGGCAGTCATGACTGAAGAAGAGTCCAAGAAATTTGAAGgtatttattt ... atcttaacagGTCTTCCCGGAGTCGTCTTCGTGCTACCAGATTCCTATATTGATCCGGTGA
EST: CATAGGCTTTCAGGCAGTCATGACTGAAGAAGAGTCCAAGAAATTTGAAG GTCTTCCCGGAGTCGTCTTCGTGCTACCAGATTCCTATATTGATCCGGTGA
genomic: CATAGGCTTTCAGGCAGTCATGACTGAAGAAGAGTCCAAGAAATTTGAAGgtatttattt ... atcttaacagGTCTTCCCGGAGTCGTCTTCGTGCTACCAGATTCCTATATTGATCCGGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGGAAGAGGCCAAGAAGAAAATGTATGCGTGCAGCACAACAACTTACATAGGCTTTCAGGCAGTCATGACTGAAGAAGAGTCCAAGAAATTTGAAGgtatttatttgttcctactttcaaattccatgacccagtccagagaaaatcatttgatgtttgatttgctgcatcttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG