1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acagctgcttttctttcttcccccacttcattcttggaaccaagtgctgggggattctatagtttggttctcattcttgttatctcctttacctttccagGCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATG
species | Glycine max |
transcript | GLYMA08G20090.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGAGCTCTTTGAGAGGATTTGCAGTGCTGGAAGATTCAGCGAAGATGAG GCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCEST: gi|298184366|gb|HO029579.1|HO029579
genomic: GAGAGCTCTTTGAGAGGATTTGCAGTGCTGGAAGATTCAGCGAAGATGAGgtcggtcatt ... acctttccagGCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCC
EST: GAGAGCTCTTTGAGAGGATTTGCAGTGCTGGAAGATTCAGCGAAGATGAG GCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCEST: gi|254322662|gb|GR838076.1|GR838076
genomic: GAGAGCTCTTTGAGAGGATTTGCAGTGCTGGAAGATTCAGCGAAGATGAGgtcggtcatt ... acctttccagGCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCC
EST: GAGAGCTCTTTGAGAGGATTTGCAGTGCTGGAAGATTCAGCGAAGATGAG GCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCEST: gi|254339597|gb|GR848314.1|GR848314
genomic: GAGAGCTCTTTGAGAGGATTTGCAGTGCTGGAAGATTCAGCGAAGATGAGgtcggtcatt ... acctttccagGCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCC
EST: GAGAGCTCTTTGAGAGGATTTGCAGTGCTGGAAGATTCAGCGAAGATGAG GCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCC
genomic: GAGAGCTCTTTGAGAGGATTTGCAGTGCTGGAAGATTCAGCGAAGATGAGgtcggtcatt ... acctttccagGCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCC
gctgggggattctatagtttggttctcattcttgttatctcctttacctttccagGCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATG
ttctcattcttgttat CT-rich tract
attctata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acagctgcttttctttcttcccccacttcattcttggaaccaagtgctgggggattctatagtttggttctcattcttgttatctcctttacctttccagGCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
-cagctgc
- - - - - - - - -ttccccc
- - - - - - - - - - - - - ttcattc
- - - - - - - - - - - - - - - - - - - - caagtgc
- - - - - - - - - - - - - - - - - - - - - - - - gggggat