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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatagaataattatattgagtgtggattgtttctgctggtaatttgttttttttttttttgtttcctttgtgattattttctttggaattttcattcttttgtagCAAATCTGTCATCGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGCCCAGCCCCACGGCTCAAAATTTGTGATTTTGGCTATTCTAAG

Basic information

species Glycine max
transcript GLYMA08G20090.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298184366|gb|HO029579.1|HO029579
EST:     GATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATG                         CAAATCTGTCATCGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGC
genomic: GATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATGgtgaatagaa ... tcttttgtagCAAATCTGTCATCGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGC
EST: gi|254336045|gb|GR841370.1|GR841370
EST:     GATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATG                         CAAATCTGTCATCGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGC
genomic: GATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATGgtgaatagaa ... tcttttgtagCAAATCTGTCATCGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGC
EST: gi|254339597|gb|GR848314.1|GR848314
EST:     GATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATG                         CAAATCTGTCATCGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGC
genomic: GATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATGgtgaatagaa ... tcttttgtagCAAATCTGTCATCGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGC
EST: gi|298175987|gb|HO015392.1|HO015392
EST:     GATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATG                         CAAATCTGTCATCGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGC
genomic: GATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATGgtgaatagaa ... tcttttgtagCAAATCTGTCATCGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGC
EST: gi|254322662|gb|GR838076.1|GR838076
EST:     GATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATG                         CAAATCTGTCATCGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGC
genomic: GATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATGgtgaatagaa ... tcttttgtagCAAATCTGTCATCGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttttttgtttcctttgtgattattttctttggaattttcattcttttgtagCAAATCTGTCATCGAGACTTGAAGCTGGAGAACACATTATTGGATGGCAGCCCAGCCCCACGGCTCAAAATTTGTGATTTTGGCTATTCTAAG
                                      ttttcattcttttgt  CT-rich tract
                                    aattttcattctttt  TA-rich tract