1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagtaatagtttattatgctcaaatcttttatgctttgcatgcttggaatatttaattgggtgtactttctcccgaggcagatttttatgttgtatttgttactcagGTACCCCTGCCATGACGTCAAGAGGATGTCTGGAAGCTGATTTTGAGACAATGGCTGAATTTCTCATTAGAGCTGCACAAATTGCAAGCATACTGCAGAG
species | Glycine max |
transcript | GLYMA08G20050.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCTATTTTTGGCGACAATGGAACTATAATTCCTGGAGGTGTAAGAGTAG GTACCCCTGCCATGACGTCAAGAGGATGTCTGGAAGCTGATTTTGAGACAAEST: gi|7588515|gb|AW704239.1|AW704239
genomic: TGCTATTTTTGGCGACAATGGAACTATAATTCCTGGAGGTGTAAGAGTAGgtgagtaata ... tgttactcagGTACCCCTGCCATGACGTCAAGAGGATGTCTGGAAGCTGATTTTGAGACAA
EST: TGCTATTTGTGGCGACAATGGAACTATAATTCCTGGAGGTGTAAGAGTAG GTACCCCTGCCATGACGTCAAGAGGATGTCTGGAAACTGATEST: gi|27426539|gb|CA938059.1|CA938059
genomic: TGCTATTTTTGGCGACAATGGAACTATAATTCCTGGAGGTGTAAGAGTAGgtgagtaata ... tgttactcagGTACCCCTGCCATGACGTCAAGAGGATGTCTGGAAGCTGAT
EST: TGCTATTTTTGGCGACAATGGAACTATAATTCCTGGAGGTGTAAGAGTAG GTACCCCTGCCATGACGTCAAGAGGATGTCTGGAAGCTGATTTTGAGACAAEST: gi|15812340|gb|BI784615.1|BI784615
genomic: TGCTATTTTTGGCGACAATGGAACTATAATTCCTGGAGGTGTAAGAGTAGgtgagtaata ... tgttactcagGTACCCCTGCCATGACGTCAAGAGGATGTCTGGAAGCTGATTTTGAGACAA
EST: TGCTATTTTTGGCGACAATGGAACTATAATTCCTGGAGGTGTAAGAGTAG GTACCCCTGCCATGACGTCAAGAGGATGTCTGGAAGCTGATTTTGAGACAA
genomic: TGCTATTTTTGGCGACAATGGAACTATAATTCCTGGAGGTGTAAGAGTAGgtgagtaata ... tgttactcagGTACCCCTGCCATGACGTCAAGAGGATGTCTGGAAGCTGATTTTGAGACAA
ttaattgggtgtactttctcccgaggcagatttttatgttgtatttgttactcagGTACCCCTGCCATGACGTCAAGAGGATGTCTGGAAGCTGATTTTGAGACAATGGCTGAATTTCTCATTAGAGCTGCACAAATTGCAAGCATACTGCAGAG
atttaat putative branch site (score: 4)
atttttatgttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaatagtttattatgctcaaatcttttatgctttgcatgcttggaatatttaattgggtgtactttctcccgaggcagatttttatgttgtatttgttactcagGTACCCCTGCCATGACGTCAAGAGGATGTCTGGAAGCTGATTTTGAGACAATGGCTGAATTTCTCATTAGAGCTGCACAAATTGCAAGCATACTGCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG