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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataacatacctattccctttcttaaacttaaatttccctctgaatttttcttgattatatatagttcactttcatgaaatgatttatattctaattattgccagACATGAATGGTAACACTGCACTATGGGATGCTATAGCATCAAAACATTACTCAATATTCCGGATCCTCTTCCAGCTTTCTGCTCTCTCTGATCCAAACAT

Basic information

species Glycine max
transcript GLYMA08G20030.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337862|gb|CO981728.1|CO981728
EST:     AGCATGCATGCAACATGCATATAAAAG                         ACATGAATGGTAANNCTGCACTATGGGATGCTATAGCATCAAAACATTACT
genomic: AGCATGCATGCAACATGCATATAAAAGgtataacata ... ttattgccagACATGAATGGTAACACTGCACTATGGGATGCTATAGCATCAAAACATTACT
EST: gi|14011854|gb|BG726776.1|BG726776
EST:     AGGGTGTGTTAAAGTCTTACTCAAGCATGCATGCAACATGCATATAAAAG                         ACATGAATGGTAACACTGCACTATGGGATGCTATAGCATCAAAACATTACT
genomic: AGGGTGTGTTAAAGTCTTACTCAAGCATGCATGCAACATGCATATAAAAGgtataacata ... ttattgccagACATGAATGGTAACACTGCACTATGGGATGCTATAGCATCAAAACATTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgattatatatagttcactttcatgaaatgatttatattctaattattgccagACATGAATGGTAACACTGCACTATGGGATGCTATAGCATCAAAACATTACTCAATATTCCGGATCCTCTTCCAGCTTTCTGCTCTCTCTGATCCAAACAT
                                       ttctaat  putative branch site (score: 2)
                    tttcatgaaatgattt  TA-rich tract