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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatagattcactattcattattcctatatcttgcttactcttacagttgaaattttgtattggtaaacagTATCTTCCTCATGTTGTGCCTCTTGCATTTTCTTCCTGCAATCTTGATGATGGCTCTGCGGTTGACATTGATGAGTGTGACGATGAAATCACTAATGGAT

Basic information

species Glycine max
transcript GLYMA08G19960.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19960.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G408305_T01 (Zea mays), 3'ss of exon 12
gtatgcatagattcactattcattattcctatatcttgcttac-tcttacagttgaaattttgtattggtaaac-----agTATCTTCCTCATGTTGTGCCTCTTGCATTTTCTTCCTGCAATCTTGATGATGGCTCTGCGGTTGACATTGATGAGTGTGACGATGAAATCACTAATGGAT---
   |    ||  ||  ||    ||  |   || |||   | |  | || || ||   |   ||  ||| |  ||     ||||||||||||||||||| ||||| | |||||||||||||||  | |||||||| ||||| || |||||||||||   || ||||   ||    |||||||   
--gtaacaagggtctttaaaagtttatttaatttctgattgatgttttgcatttaccaaagtgagttgtttcacgtttcagTATCTTCCTCATGTTGTCCCTCTCGTATTTTCTTCCTGCAACTTGGATGATGGTTCTGCTGTGGACATTGATGA---TGCCGATAGCATTGAAAATGGATTTG

upper sequence: GLYMA08G19960.1 (Glycine max), 3'ss of exon 9
lower sequence: AT4G27640.1 (Arabidopsis thaliana), 3'ss of exon 9
gtatgcatagattcactattcattattcctata----tct--tgcttactcttacagttgaaattttgtattggtaaacagTATCTTCCTCATGTTGTGCCTCTTGCATTTTCTTCCTGCAATCTTGATGATGGCTCTGCGGTTGACATTGATGAGTGTGACGATGAAATCACTAATGGAT
|| |||||| |||   |    ||       |||    ||   || |||   ||| |||  | ||   || ||      |||||| | |||| |||| ||||  | | |||| |||| ||||||||||||||||| ||||| || |||||||||||||  || |||||||     ||||  |
gtgtgcatacatttctttcaaatagacttcataatactccagtgattaggtttaaagtaaacatagcgt-ttttcccgcagTATTTGCCTCGTGTTATGCCATTAGTATTTGCTTCGTGCAATCTTGATGATGGATCTGCAGTGGACATTGATGAGTCAGATGATGAAAATGTCAATGATT

upper sequence: GLYMA08G19960.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv12s0034g02160.t01 (Vitis vinifera), 3'ss of exon 9
-----------gtatgcatagattcactattcattattcctatatcttgcttactcttacagttgaaattttgtattggtaaacagTATCTTCCTCATGTTGTGCCTCTTGCATTTTCTTCCTGCAATCTTGATGATGGCTCTGCGGTTGACATTGATGAGTGTGACGATGAAATCACTAATGGAT
            | |   |  ||| | | |   | ||   | | | ||    |   |||    | |||  || | |||| |||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||| ||||| || ||||||||||| | ||| ||||||| ||  |||||||
gtattacacagttctatttgaattaagtttatgtgataatt-tcttttagccatgtttatgtgtaaaaagttattttggcaaacagTATCTTCCACATGTTGTACCTCTGGCATTTTCGTCCTGCAATCTTGATGATGGTTCTGCTGTGGACATTGATGAATCTGATGATGAAAACATCAATGGAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13477942|gb|BG507613.1|BG507613
EST:     ATGGTTTCTTCAGCAATGTTGCTGTTATTTGGGATGACAGTTTTGCACAT                         TATCTTCCTCATGTTGTGCCTCTTGCATTTTCTTCCTGCAATCTTGATGAT
genomic: ATGGATTCTTCAGCAATGTTGCTGAGATTTTGGATGACAGTTTTGCACATgtatgcatag ... tggtaaacagTATCTTCCTCATGTTGTGCCTCTTGCATTTTCTTCCTGCAATCTTGATGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattattcctatatcttgcttactcttacagttgaaattttgtattggtaaacagTATCTTCCTCATGTTGTGCCTCTTGCATTTTCTTCCTGCAATCTTGATGATGGCTCTGCGGTTGACATTGATGAGTGTGACGATGAAATCACTAATGGAT
                               ttgaaattttgtatt  TA-rich tract