1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acttaaccaaaaacatatttagcattttttaattaataataatgaacatcgtagcattagcatgtgcatatattgcctaatgctatgcctctgcatgtagGAAAGTTGGATGAAACTTCATCTCCGGATGAAGAAGGCTTTGAATCTTCTGGGGATCATGTAGTAGACAAGCCAGTGAATATTGGTAATGTTTCAAATTC
species | Glycine max |
transcript | GLYMA08G19890.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCCCACTGCGAGGATATTCTGCATACTCGAATTACAAACCTTCGTAAAA GAAAGTTGGATGAAACTTCATCTCCGGATGAAGAAGGCTTTGAATCTTCTG
genomic: TTCCCACTGCGAGGATATTCTGCATACTCGAATTACAAACCTTCGTAAAAgtaacatttt ... ctgcatgtagGAAAGTTGGATGAAACTTCATCTCCGGATGAAGAAGGCTTTGAATCTTCTG
acatcgtagcattagcatgtgcatatattgcctaatgctatgcctctgcatgtagGAAAGTTGGATGAAACTTCATCTCCGGATGAAGAAGGCTTTGAATCTTCTGGGGATCATGTAGTAGACAAGCCAGTGAATATTGGTAATGTTTCAAATTC
gcctaat putative branch site (score: 3)
tgcctct putative PPT
atatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttaaccaaaaacatatttagcattttttaattaataataatgaacatcgtagcattagcatgtgcatatattgcctaatgctatgcctctgcatgtagGAAAGTTGGATGAAACTTCATCTCCGGATGAAGAAGGCTTTGAATCTTCTGGGGATCATGTAGTAGACAAGCCAGTGAATATTGGTAATGTTTCAAATTC
- - - - aaaaaca
- - - - - - - - - - - - - - - - - - - - aatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatgcc