1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aaacaaataagtctctgcgagatactgttgcattgtgatctcaaatattatatcattctttcaaacgattcatgctcaccttgttttaatctatgtcaagAGCAAGGAAGAGATATATAACAAGAGAGATAGACAAAAATAGAGTGTAC
species | Glycine max |
transcript | GLYMA08G19840.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tattatatcattctttcaaacgattcatgctcaccttgttttaatctatgtcaagAGCAAGGAAGAGATATATAACAAGAGAGATAGACAAAAATAGAGTGTAC
ttgttttaatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacaaataagtctctgcgagatactgttgcattgtgatctcaaatattatatcattctttcaaacgattcatgctcaccttgttttaatctatgtcaagAGCAAGGAAGAGATATATAACAAGAGAGATAGACAAAAATAGAGTGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
aaacaaa
- - - - - -tctctgc
- - - - - - - - - - - - ctgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgctc