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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactagtgaaattgagacaagttttcaccatttattcattctcactcaaacatttgcttatgtatgtaatcaaaaatcaatattgtgtag

Basic information

species Glycine max
transcript GLYMA08G19810.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19810.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0034g01210.t01 (Vitis vinifera), 5'ss of exon 3
AGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactagtgaaattgagacaagt-tttcaccatttattcattctcactcaaacatttgcttatgt---atgtaatcaaaaatcaatattgtgtag--
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AGACCCAAATTCTTAAGGTCAATTGCAAACTACCAAGCAATCAATGTGGATACTCTAAGGGCTCAGAACATGGAATCTTTTCCATTCTTCAACCAGgtaatatttgagtagttcccgcatttgcttaatctctggttgacattcacttgggtttttattcttattttatatatttatttatttgttttttgtagaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9204643|gb|BE330867.1|BE330867
EST:     TCGATACTCTAAGGGCCCAAAATATTGAATCTTGGCCATTCTTCAACCAG                         GTGACAGCAGATTTAACACCTTTTAATCCCAAG-AAAGTAGCTGTAAAATT
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCC-AAGGAAAGTAGCTGTAAAATT
EST: gi|7691813|gb|AW759933.1|AW759933
EST:     TCGATACTCTAAGGGCCCAAAATATGGAATCTTGACCATTCTTCAACCAG                         GTGACAGCAGATGTAACACCTGTGAATCCAAGGAAAGTAGCTGTAAAA
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAA
EST: gi|9902035|gb|BE611003.1|BE611003
EST:     TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAG                         GTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTT
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTT
EST: gi|17023832|gb|BM094866.1|BM094866
EST:     TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAG                         GTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTT
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTT
EST: gi|10233924|gb|BE802812.1|BE802812
EST:     TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAC                         GTGACAGCAGATNTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTT
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTT
EST: gi|21889067|gb|BQ742280.1|BQ742280
EST:     TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAG                         GTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTT
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTT
EST: gi|16348015|gb|BI973610.1|BI973610
EST:     TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGNCATTCTTCAACCAG                         GTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTT
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTT
EST: gi|7926228|gb|AW832254.1|AW832254
EST:     TCGATACTCTAAGGGCCCANAATATGGAATCTTGGCCATTCTTCAACCAG                         GTGACAGCAGATTTAACACCTTTTAATCCAAAGAAAGTAGCTGTAAAATTT
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTT