1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCTTTTTGTTCAAGGCTGCTGAGTTGTGCATGGTTGGTTTGAGTGCTGGTGCAGTACAGGGTGCGTTGTCAAACTCTTTGGCTAGTAAAAAGGAGGGGAGgtaagcagggttgaaacccaacttatgttcaatagcattcaattcatttaattgtttaatactatagttttacccatggttggttaaattatgagtgctatattaattttatctttgcatatgttgttcctgaattgtctgcag
species | Glycine max |
transcript | GLYMA08G19780.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCAGTACAGGGTGCGTTGTCAAACTCTTTGGCTAGTAAAAAGGAGGGGAG ATTATCTGTGACAGTCCCAAGTGTGAGCAGTAATGCTCTTGGTTATGGTGCEST: gi|13481224|gb|BG510567.1|BG510567
genomic: GCAGTACAGGGTGCGTTGTCAAACTCTTTGGCTAGTAAAAAGGAGGGGAGgtaagcaggg ... ttgtctgcagATTATCTGTGACAGTCCCAAGTGTGAGCAGTAATGCTCTTGGTTATGGTGC
EST: GTCAAACTCTTTGGCTAGTAAAAAGGAGGGGAG ATTATCTGTGACAGTCCCAAGTGTGAGCAGTAATGCTCTTGGTTATGGTGCEST: gi|26268061|gb|CA819124.1|CA819124
genomic: GTCAAACTCTTTGGCTAGTAAAAAGGAGGGGAGgtaagcaggg ... ttgtctgcagATTATCTGTGACAGTCCCAAGTGTGAGCAGTAATGCTCTTGGTTATGGTGC
EST: GCAGTACAGGGTGCGTTGTCAAACTCTTTGGCTAGTAAAAAGGAGGGGAG ATTATCTGTGACAGTCCCAAGTGTGAGCAGTAATGCTCTTGGTTATGGTGC
genomic: GCAGTACAGGGTGCGTTGTCAAACTCTTTGGCTAGTAAAAAGGAGGGGAGgtaagcaggg ... ttgtctgcagATTATCTGTGACAGTCCCAAGTGTGAGCAGTAATGCTCTTGGTTATGGTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTTTTGTTCAAGGCTGCTGAGTTGTGCATGGTTGGTTTGAGTGCTGGTGCAGTACAGGGTGCGTTGTCAAACTCTTTGGCTAGTAAAAAGGAGGGGAGgtaagcagggttgaaacccaacttatgttcaatagcattcaattcatttaattgtttaatactatagttttacccatggttggttaaattatgagtgctatattaattttatctttgcatatgttgttcctgaattgtctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG