Sequence
atgc intronic sequence ATGC exonic sequenceAGACCGAAACTTTTGAGGCCAAATGGAAAGATCTATCAGGCAATTAATGTGGATACCTTAAGAGCTCAAAATATAGAAACTTGGCCCTTCTACAACCAGgtagtacagttctaagttctaactaatattattagtatttgtttatatgtttttttttttttgaaggctttggttatatggtctgaactttgaaaacata...
Basic information
species | Glycine max |
transcript | GLYMA08G19730.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G19730.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0034g01180.t01 (Vitis vinifera), 5'ss of exon 3
AGACCGAAACTTTTGAGGCCAAATGGAAAGATCTATCAGGCAATTAATGTGGATACCTTAAGAGCTCAAAATATAGAAACTTGGCCCTTCTACAACCAGgtagtacagttctaagttctaacta----atattattagtatttgtttatatgtttttttttttttgaaggctttggttatatggtctgaactttgaaaacata
|| || ||| | || || ||||||||||| ||||| ||||| |||||||||||||| || || |||||||| || ||||||||||| |||| ||||||||| | | ||| | |||| ||||| || | | |||| || | || || || | | || || | | || | || |
AGGCCCAAATTCTTAAGACCAAATGGAAAAATCTACCAGGCCATTAATGTGGATACTTTGAGGGCTCAAAACATGGAAACTTGGCCATTCTTCAACCAGgttctttcttcctattcacaaactgcttcatattttttgcttctgttcat-tattgagcagttcctggat-tactaatttcatagcataaaaaatcgaacaa--
upper sequence: GLYMA08G19730.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ32612 (Selaginella moellendorffii), 5'ss of exon 3
AGACCGAAACTTTTGAGGCCAAATGGAAAGATCTATCAGGCAATTAATGTGGATACCTTAAGAGCTCAAAATATAGAAACTTGGCCCTTCTACAACCAGgtagtacagttctaagttctaactaatattattagtatttgtttatatgtttttttttttttgaaggctttggttatatggtctgaactttgaaaacata
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CGTCCAAAGCTGCTGCGGCCGAATGGACCAATCTACCAGGCGATCAACAACGACACTTTGAGAGCTCAAAACTTAGAAACCTGGCCCTTCTTCAACCAGgttg-acgtcagtcagtatttcatgatatc-cgattccttatacttgcgttgtag---------------------------------------------
upper sequence: GLYMA08G19730.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ16667 (Selaginella moellendorffii), 5'ss of exon 3
AGACCGAAACTTTTGAGGCCAAATGGAAAGATCTATCAGGCAATTAATGTGGATACCTTAAGAGCTCAAAATATAGAAACTTGGCCCTTCTACAACCAGgtagtacagttctaagttctaactaatattattagtatttgtttatatgtttttttttttttgaaggctttggttatatggtctgaactttgaaaacata
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CGTCCAAAGCTGCTGCGGCCGAATGGACCAATCTACCAGGCGATCAACAACGACACTTTGAGAGCTCAAAACTTAGAAACCTGGCCCTTCTTCAACCAGgt--tgacgtagtcagtatttcatgatatc-cgattccttatacttgcgttgtag---------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209698250|gb|BW678021.1|BW678021EST: TGGATACCTTAAGAGCTCAAAATATAGAAACTTGGCCCTTCTACAACCAG GCTACTGCCAATTTAGTGCCTCTTAACTCAAGAAGGGTGGCTGTCAA
genomic: TGGATACCTTAAGAGCTCAAAATATAGAAACTTGGCCCTTCTACAACCAGgtagtacagt ... attactgcagGCTACTGCCAATTTAGTGCCTCTTAACTCAAGAAGGGTGGCTGTCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGACCGAAACTTTTGAGGCCAAATGGAAAGATCTATCAGGCAATTAATGTGGATACCTTAAGAGCTCAAAATATAGAAACTTGGCCCTTCTACAACCAGgtagtacagttctaagttctaactaatattattagtatttgtttatatgtttttttttttttgaaggctttggttatatggtctgaactttgaaaacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA