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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCGTGTTTGTGCTTTTCCAGCAAGTCGATTGGGATTGCAAGGGATAGGAATTAGTCCAGACTGCAATCCTGAAAACGTGTGTAGCCCACGACAGgtaaccctgcattctgtgaaaacataataattttcttaagggtaagtagatgaatattctgcatgaaatcattgcag

Basic information

species Glycine max
transcript GLYMA08G19720.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19720.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os11g34370.1 (Oryza sativa), 5'ss of exon 6
GTTCGTGTTTGTGCTTTTCCAGCAAGTCGATTGGGATTGCAAGGGATAGGAATTAGTCCAGACTGCAATCCTGAAAACGTGTGTAGCCCACGACAGgtaac---cctgcattctgtgaaaacataataattttcttaagggtaagtagatgaatattc--tgcatgaaatcattgcag
|||||  |||||||||| ||||| |||||| | |||||||||||||| || |||||||||||||||||||| || |||     |||||| |||||||| |    | | |    ||   ||   | |  | |  | |      |  | ||       ||  | |   ||   ||| |||
GTTCGAATTTGTGCTTTCCCAGCCAGTCGACTAGGATTGCAAGGGATTGGTATTAGTCCAGACTGCAATCCGGAGAACAGAGCTAGCCCCCGACAGgtcagtcactttcgaaatgcacaatttttaccactcaccttgattcactttgacactgtctcaattctcaaatcaattacag

upper sequence: GLYMA08G19720.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0034g01170.t01 (Vitis vinifera), 5'ss of exon 6
GTTCGTGTTTGTGCTTTTCCAGCAAGTCGATTGGGATTGCAAGGGATAGGAATTAGTCCAGACTGCAATCCTGAAAACGTGTGTAGCCCACGACAGgtaaccctgca--ttctgtgaaaacataataa--ttttcttaagggtaagtagatga-atattctgcatgaaatcattgcag
|||||||| |||||||| || ||| |||| ||||| ||| | ||||| || || |||||||||||||||||||||||   |  || ||| ||| ||||||   |  |  |  |  ||   |||| ||   |||  | |||| ||||   |||| || || |      ||  ||| |||
GTTCGTGTCTGTGCTTTCCCCGCAGGTCGGTTGGGGTTGGATGGGATTGGGATAAGTCCAGACTGCAATCCTGAAAATAGGGCTACCCCTCGAGAGgtaatgttttaactcttaggagtgcatagtaccctttcttcaaggataaggccatgacatttttttaccttaactatttcag