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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgtttcctacactcttttttgctgaatttagaaaaaacaatttctatgcctactactctgtgtttcaaacaatgtttgtgcaacctgagttaggttgctatagacatgtacatgtacccttgctagtatggggcaccctcattcttttagattcacccaggcattttttttgttgatttcagGATCCAGTAACAGGTATTCCTACTTGGCATGATAGACCACAATCTCCACTTGTGAT

Basic information

species Glycine max
transcript GLYMA08G19700.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19700.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv12s0034g01130.t01 (Vitis vinifera), 3'ss of exon 7
gttagtgtttcctacactcttttttgctgaatttagaaaaaacaatttctatgcctactactctgtgtttcaaacaatgtttgtgcaacctgagttaggttgctatagacatgtacatgtacccttgctagtatggggcaccctcattcttttagattcacccaggcattttttttgttgatttcagGATCCAGTAACAGGTATTCCTACTTGGCATGATAGACCACAATCTCCACTTGTGAT
                         | |   | |    | |||  ||   |   || ||| | | | |  ||||  |||| ||          |||  ||  |||   |  |  | || |||   |  |  | | |      ||  || | ||| | |   | |     || ||  ||||||| |||||||||||||||||| |||| |  |||||||||||    |  |||||  |  |  |
-------------------------gttagttct---tagaacctttgaaaaatctcctattgtatttaacaaatgatgtctg----------gttcagtcactaataaagtaaagat-tacatgtagtgatttaga-----ctttttttcttaaacttgtcaaattgcttctt--gttgattgcagGATCCAGTAACAGGTCTTCCAATGTGGCATGATAGGTATCCGTCTCCTGTGCTATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggggcaccctcattcttttagattcacccaggcattttttttgttgatttcagGATCCAGTAACAGGTATTCCTACTTGGCATGATAGACCACAATCTCCACTTGTGAT
                                           tgttgat  putative branch site (score: 4)
                                    ttttttttgtt  CT-rich tract
                                   attttttttgttgatt  TA-rich tract