1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aactaagtgattagcaagcaatattctaatctatcttctttctgaagcaaaattctcttttgcgttcggcattttctaatatatcatcttctatcaacagGGTGGAAAATATCTCTAGTTTCCTGAAGCCTCAAGACAAGGAGATGAAGCAATTCGAGGCAGAGAGAGAGAAAATTAAAAAAATTCATGAAGAGAAAAAG
species | Glycine max |
transcript | GLYMA08G19690.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
agcaaaattctcttttgcgttcggcattttctaatatatcatcttctatcaacagGGTGGAAAATATCTCTAGTTTCCTGAAGCCTCAAGACAAGGAGATGAAGCAATTCGAGGCAGAGAGAGAGAAAATTAAAAAAATTCATGAAGAGAAAAAG
ttctaat putative branch site (score: 2)
tcatcttct putative PPT
attttctaatatatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactaagtgattagcaagcaatattctaatctatcttctttctgaagcaaaattctcttttgcgttcggcattttctaatatatcatcttctatcaacagGGTGGAAAATATCTCTAGTTTCCTGAAGCCTCAAGACAAGGAGATGAAGCAATTCGAGGCAGAGAGAGAGAAAATTAAAAAAATTCATGAAGAGAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- ctaagtg
- - - - - - -gcaagca
- - - - - - - - - - - - - - - - - - - - -ctgaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcattt