Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcacctatttctacctataatctatttgattgtgttgggctttattttttcattttccttagggtttgtgtttctgattacttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACCTCCTCTCTCACATTTATGTTCACGACAT

Basic information

species Glycine max
transcript GLYMA08G19620.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192334803|gb|FK025952.1|FK025952
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|193352345|gb|FK314319.1|FK314319
EST:     GAAGTCGTACGACAAGGTTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAG
genomic: GAAGTCGTACGACAAGG-TTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAG
EST: gi|298180054|gb|HO025269.1|HO025269
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|192297847|gb|FG988331.1|FG988331
EST:     CGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|16347790|gb|BI973385.1|BI973385
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|151407739|gb|EV277554.1|EV277554
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|8403794|gb|BE059361.1|BE059361
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|192322362|gb|FK014603.1|FK014603
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|9564042|gb|BE473551.1|BE473551
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|33387927|gb|CA851134.1|CA851134
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|151409137|gb|EV278945.1|EV278945
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|58020870|gb|CX707612.1|CX707612
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|192294140|gb|FG986229.1|FG986229
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|14258420|gb|BG881328.1|BG881328
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCANGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|298184345|gb|HO029558.1|HO029558
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAAGACGATTGACCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|58024842|gb|CX711583.1|CX711583
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|58020675|gb|CX707417.1|CX707417
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|254347672|gb|GR853921.1|GR853921
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|151409264|gb|EV279072.1|EV279072
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|58017178|gb|CX703920.1|CX703920
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|192295778|gb|FG992604.1|FG992604
EST:     AAGGTTGCGGATGTGTGCGACAACTTGGTGCTTCAG                         GTTGCAGCTGAGGGCATTGCTCATCAGGACGATTGGCCCTACACAATTCAC
genomic: AAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggctttattttttcattttccttagggtttgtgtttctgattacttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACCTCCTCTCTCACATTTATGTTCACGACAT
                                   ttctgat  putative branch site (score: 3)
                                         ttacttc  CT-rich tract
     ttattttttcatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcacctatttctacctataatctatttgattgtgttgggctttattttttcattttccttagggtttgtgtttctgattacttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACCTCCTCTCTCACATTTATGTTCACGACAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC