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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAACCCAGCTAAGGTAATTCCTCGCAACCCCTAACTAAACCTTCAAAGGATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAGgtaattaaccacctacacgtgctcatcatcgatcattgctatctttctttctttctttccctttcttgtttcttgcatcttggtttctagatagctattt...

Basic information

species Glycine max
transcript GLYMA08G19580.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298187563|gb|HO034712.1|HO034712
EST:     GATCATCATGGGCAGTCACAATGCTTTGGCTGTCACTTTCGGAATATTAG                         GTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
genomic: GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAGgtaattaacc ... tgctgatcagGTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
EST: gi|298185761|gb|HO028072.1|HO028072
EST:     GATCACCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAG                         GTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
genomic: GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAGgtaattaacc ... tgctgatcagGTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
EST: gi|7589271|gb|AW705048.1|AW705048
EST:     GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAG                         GTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
genomic: GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAGgtaattaacc ... tgctgatcagGTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
EST: gi|5342404|gb|AI794688.1|AI794688
EST:     GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAG                         GTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
genomic: GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAGgtaattaacc ... tgctgatcagGTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
EST: gi|298188152|gb|HO034845.1|HO034845
EST:     GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAG                         GTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
genomic: GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAGgtaattaacc ... tgctgatcagGTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
EST: gi|298175454|gb|HO015087.1|HO015087
EST:     GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAG                         GTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
genomic: GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAGgtaattaacc ... tgctgatcagGTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
EST: gi|298190324|gb|HO032445.1|HO032445
EST:     GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAG                         GTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
genomic: GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAGgtaattaacc ... tgctgatcagGTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
EST: gi|298182014|gb|HO026189.1|HO026189
EST:     GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAG                         GTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
genomic: GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAGgtaattaacc ... tgctgatcagGTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
EST: gi|298179714|gb|HO024929.1|HO024929
EST:     GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAT                         GTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
genomic: GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAGgtaattaacc ... tgctgatcagGTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
EST: gi|298189496|gb|HO037899.1|HO037899
EST:     GATCATCAT-GGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAG                         GTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
genomic: GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAGgtaattaacc ... tgctgatcagGTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
EST: gi|298199112|gb|HO042475.1|HO042475
EST:     GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAG                         GTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
genomic: GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAGgtaattaacc ... tgctgatcagGTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
EST: gi|7589881|gb|AW705646.1|AW705646
EST:     GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAG                         GTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
genomic: GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAGgtaattaacc ... tgctgatcagGTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
EST: gi|298170026|gb|HO018650.1|HO018650
EST:     GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAG                         GTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
genomic: GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAGgtaattaacc ... tgctgatcagGTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
EST: gi|6666484|gb|AW277878.1|AW277878
EST:     GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAG                         GTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
genomic: GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAGgtaattaacc ... tgctgatcagGTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
EST: gi|298187340|gb|HO034489.1|HO034489
EST:     GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAG                         GTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
genomic: GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAGgtaattaacc ... tgctgatcagGTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
EST: gi|298194228|gb|HO040876.1|HO040876
EST:     GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAG                         GTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
genomic: GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAGgtaattaacc ... tgctgatcagGTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
EST: gi|298163327|gb|HO012060.1|HO012060
EST:     GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAG                         GTAACATCATTTCTGTGACGGTGTACTTGGCTCCGGT
genomic: GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAGgtaattaacc ... tgctgatcagGTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT
EST: gi|298170305|gb|HO018929.1|HO018929
EST:     GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATACTAG                         GTAACATCATTTCTGTGATGGCGTACTTGGCTCCGGT
genomic: GATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAGgtaattaacc ... tgctgatcagGTAACATCATTTCTGTGATGGTGTACTTGGCTCCGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAAACCCAGCTAAGGTAATTCCTCGCAACCCCTAACTAAACCTTCAAAGGATCATCATGGGCAGTCACAATGCTTTGGCTGCCACTTTCGGAATATTAGgtaattaaccacctacacgtgctcatcatcgatcattgctatctttctttctttctttccctttcttgtttcttgcatcttggtttctagatagctattt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttccc