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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctttcatttctgctattcgggtggttttattttatgtacattttaaaaacttcttttttacattttacattttacattttatttttaattattgttattgttgtgcagATGGTACAGAATCAAGATTACTTTGAGATGGGAGGACGGTGATGACTCCCATCCCGGGGTTCCTGCACGGGTTGTTCAGTATGAAG

Basic information

species Glycine max
transcript GLYMA08G19570.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193418132|gb|FK381768.1|FK381768
EST:     GTTGCTGTTTACATTCATAGGTTTCACAATCTCGACCTTTTTGAACAAGG                         ATGGTACAGAATCAAGATTACTTTGAGATGGGAGGACGGTGATGACTCCCA
genomic: GTTGCTGTTTACATTCATAGGTTTCACAATCTTGACCTTTTTGAACAAGGgtaagctttc ... tgttgtgcagATGGTACAGAATCAAGATTACTTTGAGATGGGAGGACGGTGATGACTCCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttacattttacattttacattttatttttaattattgttattgttgtgcagATGGTACAGAATCAAGATTACTTTGAGATGGGAGGACGGTGATGACTCCCATCCCGGGGTTCCTGCACGGGTTGTTCAGTATGAAG
                             ttttaat  putative branch site (score: 3)
        attttacattttacat  TA-rich tract