Sequence
atgc intronic sequence ATGC exonic sequenceCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTAATTTAACATACCACCTATTCCTTTGTCTCAGCCCTGgtaagctttctatttatacatttagttatcacttggttttgtatggcttattgatcttggcatgctatgaaagcacatgaatttttgtgcaaacgctgat...
Basic information
species | Glycine max |
transcript | GLYMA08G19520.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G19520.4 (Glycine max), 5'ss of exon 5
lower sequence: AT1G43640.1 (Arabidopsis thaliana), 5'ss of exon 3
CCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTAATTTAACATACCACCTATTCCTTTGTCTCAGCCCTGgtaagctttctatttatacatttagttatcacttggttttgtatggcttattgatcttggcatgctatgaaa-gcacatga---atttttgtgcaaacgctgat-------------------------------------------------------------------------------
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CCCGGGCCTAGGGATGGAATCATACAATGTTATATCAAAAGAGACAAGTCTAACATGACTTACCACCTTTACCTTTCTCTTAGTCCTGgtaagttattcgtctttgtcgat-gttactacctctgcttcagtaaaat-ttggactcaaaatttagtagaacacacatgtcatacttttgtttaaat-tcaatacttatcaagatcttgaaaatatcaagaactcgaattttctctattatttagtttttgaatcttgtcaaatttgtacag
upper sequence: GLYMA08G19520.4 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0055g00460.t01 (Vitis vinifera), 5'ss of exon 4
CCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTAATTTAACATACCACCTATTCCTTTGTCTCAGCCCTGgtaagctttctatttatacattta-gttatcacttggttttgtatggcttattgatcttggcatgctatgaaagcacatgaatttttgtgcaaacgctgat
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CCAGGGCCACGTGATGGGACTATCCAATGCTTCATCAAAAGGGATAAATCTAACTTAACTTACCACCTTTTTCTATGTCTTAGCCCTGgtaatcttcttttttttgctttttcggtaac-cttagtttgttaatttttggcagttttataaagttttccttgcatgttcttttctttttctttttctttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193575447|gb|FK527996.1|FK527996EST: AAGAGATAAATCTAATTTAACATACCACCTATTCCTTTGTCTCAGCCCTG CTTTGTTAGTTGAAAATGGAAAATTCCTCCTTTCTGCTAAGAGGACAAGGA
genomic: AAGAGATAAATCTAATTTAACATACCACCTATTCCTTTGTCTCAGCCCTGgtaagctttc ... agttttgcagCTTTGTTAGTTGAAAATGGAAAATTCCTCCTTTCTGCTAAGAGGACAAGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTAATTTAACATACCACCTATTCCTTTGTCTCAGCCCTGgtaagctttctatttatacatttagttatcacttggttttgtatggcttattgatcttggcatgctatgaaagcacatgaatttttgtgcaaacgctgat
- - - - - - - - - - - - - - - - - - - AAGAGA