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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attttgcttccagtttctgtgggagccaaatcttaaaggagattgtgggatttgaaattttgaagacttgtcttctaactctcttttttgtgctatgcagATGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATCGACTTGATTTTAACTCCAACTTTTAAGA

Basic information

species Glycine max
transcript GLYMA08G19520.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193476953|gb|FK440430.1|FK440430
EST:     CGTCTCCGAAACTAGGGCTAATACTTCATCTACCGATCTCTATATTCTGG                         ATGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATCGACTTGATTTTA
genomic: CGTCTCTGAAACTAGGGCTAATACTTCATCTACCGATCTCTATATTCTGGgtatgttgtc ... tgctatgcagATGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATCGACTTGATTTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggatttgaaattttgaagacttgtcttctaactctcttttttgtgctatgcagATGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATCGACTTGATTTTAACTCCAACTTTTAAGA
                           ttctaac  putative branch site (score: 1)
                         tcttctaactctcttt  CT-rich tract
     tttgaaattttgaa  TA-rich tract