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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaacatataaaattatccatcaacatttttttagctattattgctaaatgctaattgttataacaatgtctttgattttatttcgtttaatctcttaaattcagATTGGAGAGATTAAATTTAAGAAGAGCAGGAGGGAAGGCGAAGATAATTGGAACAATAACTGGAATTAGTGGGGCAATGCTACTGACATTCATTAAAGGC

Basic information

species Glycine max
transcript GLYMA08G19480.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21601569|gb|BQ611900.1|BQ611900
EST:     ATATCCAACCTCATTCCAGCCATCACTTTTATCATATCCCTCTCCTTCGG                         ATTGGAGAGATTAAATTTAAGAAGAGCAGGAGGGAAGGCGAAGATAATTGG
genomic: ATATCCAACCTCATTCCAGCCATCACTTTTATCATATCCCTCTCCTTCGGgtaattaaca ... ttaaattcagATTGGAGAGATTAAATTTAAGAAGAGCAGGAGGGAAGGCGAAGATAATTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctaattgttataacaatgtctttgattttatttcgtttaatctcttaaattcagATTGGAGAGATTAAATTTAAGAAGAGCAGGAGGGAAGGCGAAGATAATTGGAACAATAACTGGAATTAGTGGGGCAATGCTACTGACATTCATTAAAGGC
                                         tctctt  CT-rich tract
 attttatttcgtttaa  TA-rich tract