1 5' 3' | 2 5' 3' | 3 5' 3' |
...caaaatatcttgatgttgtgatcataattatgattgcatgcgaactgccttttaaaaccatggttggatgatatattttattttatgtacatgcatgcagGCAAATGGGCCGGCATATCAAGTTCCAACAGGGAGGAGAGATGGGTTGGTTTCCAATCTTTCGCTTGCAGATGACATGCCAGATGTTAGTGATTCAATTG
species | Glycine max |
transcript | GLYMA08G19340.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTCTTGTGCAGACATAGTGGCTTTGGCAGCCAGAGACGCTGTAGTCATG GCAAATGGGCCGGCATATCAAGTTCCAACAGGGAGGAGAGATGGGTTGGTTEST: gi|298176956|gb|HO026963.1|HO026963
genomic: TTTCTTGTGCAGACATAGTGGCTTTGGCAGCCAGAGACGCTGTAGTCATGgtccttacct ... atgcatgcagGCAAATGGGCCGGCATATCAAGTTCCAACAGGGAGGAGAGATGGGTTGGTT
EST: TTTCTTGTGCAGACATAGTGGCTTTGGCAGCCAGAGACGCTGTAGTCATG GCAAATGGGCCGGCATATCAAGTTCCAACAGGGAGGAGAGATGGGTTGGTTEST: gi|298189535|gb|HO037938.1|HO037938
genomic: TTTCTTGTGCAGACATAGTGGCTTTGGCAGCCAGAGACGCTGTAGTCATGgtccttacct ... atgcatgcagGCAAATGGGCCGGCATATCAAGTTCCAACAGGGAGGAGAGATGGGTTGGTT
EST: TTTCTTGTGCAGACATAGTGGCTTTGGCAGCCAGAGACGCTGTAGTCATG GCAAATGGGCCGGCATATCAAGTTCCAACAGGGAGGAGAGATGGGTTGGTTEST: gi|163921649|gb|EH038723.1|EH038723
genomic: TTTCTTGTGCAGACATAGTGGCTTTGGCAGCCAGAGACGCTGTAGTCATGgtccttacct ... atgcatgcagGCAAATGGGCCGGCATATCAAGTTCCAACAGGGAGGAGAGATGGGTTGGTT
EST: TTTCTTGTGCAGACATAGTGGCTTTGGCAGCCAGAGACGCTGTAGTCATG GCAAATGGGCCGGCATATCAAGTTCCAACAGGGAGGAGAGATGGGTTGGTTEST: gi|163920276|gb|EH038825.1|EH038825
genomic: TTTCTTGTGCAGACATAGTGGCTTTGGCAGCCAGAGACGCTGTAGTCATGgtccttacct ... atgcatgcagGCAAATGGGCCGGCATATCAAGTTCCAACAGGGAGGAGAGATGGGTTGGTT
EST: TTTCTTGTGCAGACATAGTGGCTTTGGCAGCCAGAGACGCTGTAGTCATG GCAAATGGGCCGGCATATCAAGTTCCAACAGGGAGGAGAGATGGGTTGGTTEST: gi|298172765|gb|HO020319.1|HO020319
genomic: TTTCTTGTGCAGACATAGTGGCTTTGGCAGCCAGAGACGCTGTAGTCATGgtccttacct ... atgcatgcagGCAAATGGGCCGGCATATCAAGTTCCAACAGGGAGGAGAGATGGGTTGGTT
EST: TTTCTTGTGCAGACATAGTGGCTTTGGCAGCCGGAGACGCTGTAGTCATG GCAAATGGGCCGGCATATCAAGTTCCAACAGGGAGGAGAGATGGGTTGGTT
genomic: TTTCTTGTGCAGACATAGTGGCTTTGGCAGCCAGAGACGCTGTAGTCATGgtccttacct ... atgcatgcagGCAAATGGGCCGGCATATCAAGTTCCAACAGGGAGGAGAGATGGGTTGGTT
tgccttttaaaaccatggttggatgatatattttattttatgtacatgcatgcagGCAAATGGGCCGGCATATCAAGTTCCAACAGGGAGGAGAGATGGGTTGGTTTCCAATCTTTCGCTTGCAGATGACATGCCAGATGTTAGTGATTCAATTG
atgatatattttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaatatcttgatgttgtgatcataattatgattgcatgcgaactgccttttaaaaccatggttggatgatatattttattttatgtacatgcatgcagGCAAATGGGCCGGCATATCAAGTTCCAACAGGGAGGAGAGATGGGTTGGTTTCCAATCTTTCGCTTGCAGATGACATGCCAGATGTTAGTGATTCAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - -gatgttg
- - - - - - - - - - - - - - - - - -gcatgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtac