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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCACATTATAAAGGATGTTCCAAATCCTCAACTACGCCACATAATACTCGAGAATAATGATCACAAGCCTGTCACAAATAGTAGAGACACACAAGAGgtatgcatccatagtaaaagcaacaatctactgacgaagtcttggttgtttcttctgtatgcttactcatcatgtctttgttgattccactttcag

Basic information

species Glycine max
transcript GLYMA08G17240.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G17240.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g48790.3 (Oryza sativa), 5'ss of exon 4
ATGGCACATTATAAAGGATGTTCCAAATCCTCAACTACGCCACATAATACTCGAGAATAATGATCACAAGCCTGTCACAAATAGTAGAGACACACAAGAGgtatgcatccatagtaaaagcaacaatctactgacgaagtcttggttgtttcttctgtatgcttactcatcatgtctttgttgattccactttcag------
|||||||||||| |||||||| || ||||| ||| | |||||||||||||| ||||| || ||  |||| ||||| ||||| || || || |||||||||||||  || ||       ||  |   | || |     |  ||       |    |  | |||||   | |  | |  |  |  ||| | | | | |      
ATGGCACATTATCAAGGATGTGCCTAATCCACAATTTCGCCACATAATACTGGAGAACAACGAAAACAAACCTGTGACAAACAGCAGGGATACACAAGAGgtatttattcaattacctagagattttttatttttttatactcatgatctcaagccatctgcttgtacgtagtat--tcataaatttcccatcctgtcttcc

upper sequence: GLYMA08G17240.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G127780_T02 (Zea mays), 5'ss of exon 7
ATGGCACATTATAAAGGATGTTCCAAATCCTCAACTACGCCACATAATACTCGAGAATAATGATCACAAGCCTGTCACAAATAGTAGAGACACACAAGAGgtatgcatccatagtaaaagcaacaatctactgacgaagtcttggttgtttcttctgtatgcttactcatcatgtctttgttgattccac-tttcag---
|||||||||||| ||||||||||| ||||| ||| | ||||| |||||  | |||||||||||  | || ||||| ||||| || || |||||||||||||||| | | |  |     ||||| | |     |      |  ||     |  ||  |  | || | | |       |||  ||     |  | ||||   
ATGGCACATTATCAAGGATGTTCCCAATCCACAATTTCGCCATATAATTTTGGAGAATAATGAGAATAAACCTGTGACAAACAGCAGGGACACACAAGAGgtattccttccaatacctagcaagagttcttggtattttttatgacaagtggttgagctttctaagttaattctcatttcatggcaatatatgtcaggaa

upper sequence: GLYMA08G17240.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G169116_T01 (Zea mays), 5'ss of exon 8
ATGGCACATTATAAAGGATGTTCCAAATCCTCAACTACGCCACATAATACTCGAGAATAATGATCACAAGCCTGTCACAAATAGTAGAGACACACAAGAGgtatgcatccatagtaaaagcaacaatctactgacgaagtcttggttgtttcttctgtatgcttactca-tcatgtctttgttgattccactttcag-----
|||||||||||| ||||||||||| ||||| ||| | ||||| |||||  | |||||||||||  | || ||||| ||||| || || ||||| |||||||||| | | |  |     ||||| | | | |||  | | | ||    |       | |  |||| || | | |  |||   || ||  || | |  |     
ATGGCACATTATTAAGGATGTTCCCAATCCACAATTTCGCCATATAATTTTGGAGAATAATGAGAATAAACCTGTGACAAACAGCAGGGACACGCAAGAGgtattccttccaatacctagcaagagtgt-ctgtggtattttttacagcaagaggt-tgagctttctaagttaattctcatttcatggcaatatgtgaggaa

upper sequence: GLYMA08G17240.2 (Glycine max), 5'ss of exon 7
lower sequence: AT1G79270.1 (Arabidopsis thaliana), 5'ss of exon 7
ATGGCACATTATAAAGGATGTTCCAAATCCTCAACTACGCCACATAATACTCGAGAATAATGATCACAAGCCTGTCACAAATAGTAGAGACACACAAGAGgtatgcatccatag--taaaagcaacaatctactgacgaagtcttggttgtttcttctgtatgcttactcatcatgtctttgttgattccactttcag
 |||||||| || || |||||||||||||| |||||||| || || ||||| ||||| |||||  |||||||||| || ||||| ||||||||||||||||||  |||   |    ||| ||    ||   | |||   | | |     | |  |    | | | ||||  | |   | ||||    | ||  |  ||
GTGGCACATCATCAAAGATGTTCCAAATCCGCAACTACGACATATCATACTAGAGAACAATGAGAACAAGCCTGTAACCAATAGCAGAGACACACAAGAGgta-acattagttccttaataggcttaaggaagtgaatcattatcaagagctaatctcatct-catactgttta-aacattgtc--cttcatatatag

upper sequence: GLYMA08G17240.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv19s0085g01100.t01 (Vitis vinifera), 5'ss of exon 7
ATGGCACATTATAAAGGATGTTCCAAATCCTCAACTACGCCACATAATACTCGAGAATAATGATCACAAGCCTGTCACAAATAGTAGAGACACACAAGAGgtatgcatccatagtaaaagcaacaatctactgacgaagtcttggttg-tttcttctgtatgctt---actcatcatgtctttgttgat-tccactttcag
 |||||||| ||||| ||||||||||| || ||  | || || |||||||| ||||| || ||  |||||||||| || ||||| ||||||||||| |||||  ||| | | |       |   |    |  ||    || ||  |   |||||| ||  | |||   ||| ||| ||| |||||||   |||  ||||||
GTGGCACATCATAAAAGATGTTCCAAACCCACAGTTGCGGCATATAATACTTGAGAACAACGACAACAAGCCTGTGACCAATAGCAGAGACACACAGGAGgtgcgca-caacaaactgttctctatctcatagaatttgttttcttcaatttcttgtgcttccttccaactaatcttgt-tttgttgtcatcctttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193426335|gb|FK386100.1|FK386100
EST:     TCGAGAATAATGATCACAAGCCTGTCACAAATAGTAGAGACACACAAGAG                         GTGAGTTTTCCCCAAGGTGTTGAAATGCTTAACATTTTCAAGAATTATGTG
genomic: TCGAGAATAATGATCACAAGCCTGTCACAAATAGTAGAGACACACAAGAGgtatgcatcc ... ccactttcagGTGAGTTTTCCCCAAGGTGTTGAAATGCTTAACATTTTCAAGAATTATGTG
EST: gi|6502234|gb|AW203607.1|AW203607
EST:     TCGAGAATAATGATCACAAGCCTGTCACAAATAGTAGAGACACACAAGAG                         GTGAGTTTTCCCCAAGGTGTTGAAATGCTTAACATTTTCAAGAATTATGTG
genomic: TCGAGAATAATGATCACAAGCCTGTCACAAATAGTAGAGACACACAAGAGgtatgcatcc ... ccactttcagGTGAGTTTTCCCCAAGGTGTTGAAATGCTTAACATTTTCAAGAATTATGTG
EST: gi|308098559|gb|HO760300.1|HO760300
EST:     TCGAGAATAATGATCACAAGCCTGTCACAAATAGTAGAGACACACAAGAG                         GTGAGTTTTCCCCAAGGTGTTGAAATGCTTAACATTTTCAAGAATTATGTG
genomic: TCGAGAATAATGATCACAAGCCTGTCACAAATAGTAGAGACACACAAGAGgtatgcatcc ... ccactttcagGTGAGTTTTCCCCAAGGTGTTGAAATGCTTAACATTTTCAAGAATTATGTG