1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgcaatttgggtccatcgcaaaaacttcagatcccctgcacccatgttttctctgcttatgtattttcagattgacaagtgataactgtgtttcttaacttcctttctggtaattgcttgtgttcagGTCAATGCTAGTGGTCAATTTTGCGGAGTAGCTGAGATGACTGGACGAGTTGATTTCAACAAAAGTATGGATTTCTGGCAACAGGATAAGTGGAATGGAT
species | Glycine max |
transcript | GLYMA08G17240.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGAGAATGGAAGAGAAAGGATGCAAGTGCCCTGTGTTCCTTTTCTTTTCG GTCAATGCTAGTGGTCAATTTTGCGGAGTAGCTGAGATGACTGGACGAGTTEST: gi|16996330|gb|BM085702.1|BM085702
genomic: AGAGAATGGAAGAGAAAGGATGCAAGTGCCCTGTGTTCCTTTTCTTTTCGgtatgcaatt ... ttgtgttcagGTCAATGCTAGTGGTCAATTTTGCGGAGTAGCTGAGATGACTGGACGAGTT
EST: AGAGAATGGAAGAGAAAGGATGCAAGTGCCCTGTGTTCCTTTTCTTTTCG GTCAATGCTAGTGGTCAATTTTGCGGAGTAGCTGAGATGACTGGACGAGTTEST: gi|308098559|gb|HO760300.1|HO760300
genomic: AGAGAATGGAAGAGAAAGGATGCAAGTGCCCTGTGTTCCTTTTCTTTTCGgtatgcaatt ... ttgtgttcagGTCAATGCTAGTGGTCAATTTTGCGGAGTAGCTGAGATGACTGGACGAGTT
EST: AGAGAATGGAAGAGAAAGGATGCAAGTGCCCTGTGTTCCTTTTCTTTTCG GTCAATGCTAGTGGTCAATTTTGCGGAGTAGCTGAGATGACTGGACGAGTT
genomic: AGAGAATGGAAGAGAAAGGATGCAAGTGCCCTGTGTTCCTTTTCTTTTCGgtatgcaatt ... ttgtgttcagGTCAATGCTAGTGGTCAATTTTGCGGAGTAGCTGAGATGACTGGACGAGTT
tgacaagtgataactgtgtttcttaacttcctttctggtaattgcttgtgttcagGTCAATGCTAGTGGTCAATTTTGCGGAGTAGCTGAGATGACTGGACGAGTTGATTTCAACAAAAGTATGGATTTCTGGCAACAGGATAAGTGGAATGGAT
tcttaac putative branch site (score: 2)
tttcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaatttgggtccatcgcaaaaacttcagatcccctgcacccatgttttctctgcttatgtattttcagattgacaagtgataactgtgtttcttaacttcctttctggtaattgcttgtgttcagGTCAATGCTAGTGGTCAATTTTGCGGAGTAGCTGAGATGACTGGACGAGTTGATTTCAACAAAAGTATGGATTTCTGGCAACAGGATAAGTGGAATGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA