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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgccctttgccttctcattatctctggccttaacctttccttcactcttttttcttgttcatttcactaacctaaaaattgatgctttcagGTTGTCAGATTTCCTTTCTAACATGCATTTAAGATGAATGCTTTTGTTTGTATGTTCCAGTAAGTTTCAAACTTGTGTTTCCTTTTACCTAAATTGTGGG

Basic information

species Glycine max
transcript GLYMA08G16340.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254331276|gb|GR845855.1|GR845855
EST:     CGACATCTAGGGGCTGCAGAGGGTGATACTGTAATTGCAAAAGACATCAG                         GTTGTCAGATTTCCTTTCTAACATGCATTTAAGATGAATGCTTTTGTTTGT
genomic: CGACATCTAGGGGCTGCAGAGGGTGATACTGTAATTGCAAAAGACATCAGgttgcccttt ... atgctttcagGTTGTCAGATTTCCTTTCTAACATGCATTTAAGATGAATGCTTTTGTTTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccttcactcttttttcttgttcatttcactaacctaaaaattgatgctttcagGTTGTCAGATTTCCTTTCTAACATGCATTTAAGATGAATGCTTTTGTTTGTATGTTCCAGTAAGTTTCAAACTTGTGTTTCCTTTTACCTAAATTGTGGG
                                              tgctttc  CT-rich tract
                                    taaaaattgat  TA-rich tract