1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtgaaatactctgactttctctgtggtcattgtattgtgcttttgcaccttgttggatgcaatgtggagctaatgtttgaaatgtctttgagcagATATTGTGAATGTTTTGCTTCGGGAATATATTGTGACGGCTGCAACTGTGTAAATTGTTGTAACAATGTGGAAAACGAAGCTGCTAGACGAGAAGCAGTT
species | Glycine max |
transcript | GLYMA08G04180.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGAAGAAGCAGAAGCAGTGCAATTGTAAACATTCAAAATGCCTGAAACT ATATTGTGAATGTTTTGCTTCGGGAATATATTGTGACGGCTGCAACTGTGTEST: gi|193380716|gb|FK347441.1|FK347441
genomic: CCGAAGAAGCAGAAGCAGTGCAATTGTAAACATTCAAAATGCCTGAAACTgtaagtgaaa ... ctttgagcagATATTGTGAATGTTTTGCTTCGGGAATATATTGTGACGGCTGCAACTGTGT
EST: TAAACATTCAAAATGCCTGAAACT ATATTGTGAATGTTTTGCTTCGGGAATATATTGTGACGGCTGCAACTGTGTEST: gi|193398454|gb|FK362094.1|FK362094
genomic: TAAACATTCAAAATGCCTGAAACTgtaagtgaaa ... ctttgagcagATATTGTGAATGTTTTGCTTCGGGAATATATTGTGACGGCTGCAACTGTGT
EST: CCGAAGAAGCAGAAGCAGTGCAATTGTAAACATTCAAAATGCCTGAAGCT ATATTGTGAATGTTTTGCTTCGGGAATATATTGTGACGGCTGCAACTGTGTEST: gi|18730183|gb|BM525733.1|BM525733
genomic: CCGAAGAAGCAGAAGCAGTGCAATTGTAAACATTCAAAATGCCTGAAACTgtaagtgaaa ... ctttgagcagATATTGTGAATGTTTTGCTTCGGGAATATATTGTGACGGCTGCAACTGTGT
EST: CCGAAGAAGCAGAAGCAGTGCAATTGTAAACATTCAAAATGCCTGAAACT ATATTGTGAATGTTTTGCTTCGGGAATATATTGTGACGGCTGCAACTGTGT
genomic: CCGAAGAAGCAGAAGCAGTGCAATTGTAAACATTCAAAATGCCTGAAACTgtaagtgaaa ... ctttgagcagATATTGTGAATGTTTTGCTTCGGGAATATATTGTGACGGCTGCAACTGTGT
ttttgcaccttgttggatgcaatgtggagctaatgtttgaaatgtctttgagcagATATTGTGAATGTTTTGCTTCGGGAATATATTGTGACGGCTGCAACTGTGTAAATTGTTGTAACAATGTGGAAAACGAAGCTGCTAGACGAGAAGCAGTT
agctaat putative branch site (score: 3)
tgtcttt putative PPT
taatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgaaatactctgactttctctgtggtcattgtattgtgcttttgcaccttgttggatgcaatgtggagctaatgtttgaaatgtctttgagcagATATTGTGAATGTTTTGCTTCGGGAATATATTGTGACGGCTGCAACTGTGTAAATTGTTGTAACAATGTGGAAAACGAAGCTGCTAGACGAGAAGCAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC