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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggattggatgtgagttacataggaatgcttgctgttttaggttttctttgagcattatatctgattcctgtcatattttttacctttagGCTTTGGACAAAATTCAACTTGAGAGTTTGTCAGACAAGAGCAAGCTTGACGCTCAGCCAGAGTTCTTCATCCACATTATTCCTGACAAGACCAACAACA

Basic information

species Glycine max
transcript GLYMA08G03690.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03690.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S83_80V6.1 (Physcomitrella patens), 3'ss of exon 1
-gtttggattggatgtgagttacataggaatgc--ttgctgttttaggttttctttgagcattatatctgattcctg--tcatattt--tttacctttagGCTTTGGACAAAATTCAACTTGAGAGTTTGTCAGACAAGAGCAAGCTTGACGCTCAGCCAGAGTTCTTCATCCACATTATTCCTGACAAGACCAACAACA
 || | | ||   | |||  |     |  |||    | |   |||         |||||  || |  |     ||||     |||||   |||  |||||||  ||||||| || |   | |||    || |||||||||||||||| || |  ||||||||| |||||||||| || ||||| |||||| | ||||| |
tgtgtaggtttactttgaaatgtgccgtgatgtgtctacgtgtttgaaagggtgttgagtgttgttgccatcccctgaactgtatttgtcttatgtttagGCCCTGGACAAGATCCGCTTCGAGTCACTGACAGACAAGAGCAAGCTCGATGGCCAGCCAGAGCTCTTCATCCATATCATTCCCGACAAGGCGAACAATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaggttttctttgagcattatatctgattcctgtcatattttttacctttagGCTTTGGACAAAATTCAACTTGAGAGTTTGTCAGACAAGAGCAAGCTTGACGCTCAGCCAGAGTTCTTCATCCACATTATTCCTGACAAGACCAACAACA
                        atctgat  putative branch site (score: 4)
                                       tattttttaccttt  putative PPT
                                      atattttttaccttta  TA-rich tract