1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgcttttattgtcattttctttcaccaacatcacctatttattcttcaaagttcatccgagttatgaaactccatcttgtattactttaatttcattattgaatgtttgtgttatgagctcagagtttcttagggataccatgcataataacactttcttgattgagactttcagGTATACTGGAGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGACTAGATCTTGCCAAGGCAATACTGGAAAAATCTGAAGGGAAGGTAAGATTG
species | Glycine max |
transcript | GLYMA07G39190.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCCGTGTGTTGGACATCAATGGCTCACAGTGCTTTCTTACCCGGACAGG GTATACTGGAGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGACTEST: gi|8669136|gb|BE190243.1|BE190243
genomic: TTCCGTGTGTTGGACATCAATGGCTCACAGTGCTTTCTTACCCGGACAGGgtatgctttt ... agactttcagGTATACTGGAGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGACT
EST: TTCCGTGTGTTGGACATCAATGGCTCACAGTGCTTTCTTACCCGGACAGG GTATACTGGAGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGACTEST: gi|10238324|gb|BE807140.1|BE807140
genomic: TTCCGTGTGTTGGACATCAATGGCTCACAGTGCTTTCTTACCCGGACAGGgtatgctttt ... agactttcagGTATACTGGAGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGACT
EST: TTTCTTACCAGGACAGG GTATACTGGGGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGAGTEST: gi|6134775|gb|AW133168.1|AW133168
genomic: TTTCTTACCCGGACAGGgtatgctttt ... agactttcagGTATACTGGAGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGACT
EST: TTCCGTGTGTTGGACATCAATGGCTCACAGTGCTTTCTTACCCGGACAGG GTATACTGGAGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGACT
genomic: TTCCGTGTGTTGGACATCAATGGCTCACAGTGCTTTCTTACCCGGACAGGgtatgctttt ... agactttcagGTATACTGGAGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGACT
cagagtttcttagggataccatgcataataacactttcttgattgagactttcagGTATACTGGAGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGACTAGATCTTGCCAAGGCAATACTGGAAAAATCTGAAGGGAAGGTAAGATTG
ctttc CT-rich tract
ataataaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcttttattgtcattttctttcaccaacatcacctatttattcttcaaagttcatccgagttatgaaactccatcttgtattactttaatttcattattgaatgtttgtgttatgagctcagagtttcttagggataccatgcataataacactttcttgattgagactttcagGTATACTGGAGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGGACTAGATCTTGCCAAGGCAATACTGGAAAAATCTGAAGGGAAGGTAAGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG