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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAAAGTTCTTGGAACTTAGCTTTTCTAACCATGCAACTGCAAATCGAGTTGCAACCTGTGGACATTCTTTGCAGAGGGATTGCCTCCGTTTTTATGGgtaaatcatccagacaaggaatcaccaatcaattttttgttatgtaatttgtgttggtcatcaatacttgaaaggtgacaaacaacctgatgtgtaacag

Basic information

species Glycine max
transcript GLYMA07G34030.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G34030.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os08g33200.1 (Oryza sativa), 5'ss of exon 6
TTGGAAAGTTCTTGGAACTTAGCTTTTCTAACCATGCAACTGCAAATCGAGTTGCAACCTGTGGACATTCTTTGCAGAGGGATTGCCTCCGTTTTTATGGgtaaatcatccagacaaggaatcaccaatcaattttttgttatgtaatttgtgttggtcatcaatacttgaaaggtgacaaacaacctgatgtgtaacag
|||| ||||||||||| || |||||||| |||||| | ||||| || ||||||||||  |||||||||||| | ||||| || ||||| ||||| ||||||||  | |||      |    |||||||| ||       ||    |||   |    || ||    | ||   |  ||  ||| | || |           
TTGGGAAGTTCTTGGAGCTAAGCTTTTCAAACCATACTACTGCTAACCGAGTTGCAAGTTGTGGACATTCTCTCCAGAGAGACTGCCTTCGTTTCTATGGgtatgt-atctgctgtatccttcaccaattaac-----attgctcaatccttcaatgtgatttcaattt---atctgctaaatatccag-----------

upper sequence: GLYMA07G34030.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os06g14750.1 (Oryza sativa), 5'ss of exon 6
TTGGAAAGTTCTTGGAACTTAGCTTTTCTAACCATGCAACTGCAAATCGAGTTGCAACCTGTGGACATTCTTTGCAGAGGGATTGCCTCCGTTTTTATGGgtaaatcatccagacaaggaatcaccaatcaattttttgttatgtaatttgtgttggtcatcaatacttgaaaggtgacaaacaacctgatgtgtaacag
|||| ||||| ||||||||||||||||| || ||  |||| || || || |||||  |||||||||||||  | |||||||| ||||| ||||||||||||||  | ||     |  |   | | |  | | |        ||||||    ||||  | ||    |  |  |                            
TTGGGAAGTTTTTGGAACTTAGCTTTTCGAATCACACAACGGCCAACCGGGTTGCCTCCTGTGGACATTCCCTTCAGAGGGACTGCCTTCGTTTTTATGGgtatgtgattatttcttgtggtaaact-tgagtcaaggccaatgtaaaaaatgtta-ttattttcatctacag---------------------------

upper sequence: GLYMA07G34030.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G092595_T01 (Zea mays), 5'ss of exon 3
TTGGAAAGTTCTTGGAACTTAGCTTTTCTAACCATGCAACTGCAAATCGAGTTGCAACCTGTGGACATTCTTTGCAGAGGGATTGCCTCCGTTTTTATGGgtaaatcatccagacaaggaatcaccaatcaattttttgttatgtaatttgtgttggtcatcaatacttgaaaggtgacaaacaacctgatgtgtaacag
|||| || ||| | || || || || || ||||||||  |||| || |||||||||| ||||||||||||  | |||||||| ||||| ||||||||||||||  |  ||      |    | ||  |  |   | ||||| |||  |    ||  |   |||| | || |||    ||   ||                
TTGGGAAATTCCTAGAGCTAAGTTTCTCAAACCATGCTTCTGCCAACCGAGTTGCAAGCTGTGGACATTCACTCCAGAGGGACTGCCTTCGTTTTTATGGgtacgt-gtctgctatattctttac--agtatcatattgttctgtgctcca-gtgagatctcaacaattcaaatacaactc-cag---------------

upper sequence: GLYMA07G34030.2 (Glycine max), 5'ss of exon 7
lower sequence: AT1G71010.1 (Arabidopsis thaliana), 5'ss of exon 6
TTGGAAAGTTCTTGGAACTTAGCTTTTCTAACCATGCAACTGCAAATCGAGTTGCAACCTGTGGACATTCTTTGCAGAGGGATTGCCTCCGTTTTTATGGgtaaatcatccagacaaggaatcaccaatcaattttttgttatgtaatttgtgttggtcatcaatacttgaaaggtgacaaacaacctgatgtgtaacag
||||||||||  |||||||||||||||| || ||||||||||| ||||| |||||| | || || |||||  | || || || ||||| || || ||||||||||     ||| |     |  | || ||   ||   ||||| | | |  ||||        | |||   ||  | |  |      || | ||||    
TTGGAAAGTTTCTGGAACTTAGCTTTTCGAATCATGCAACTGCGAATCGTGTTGCATCTTGCGGTCATTCGCTTCAAAGAGACTGCCTTCGATTCTATGGgtaaac---gcaggctgtataatatcattct-cttacagttatctcaatgctgtt--------acactaataatattatga----tttgttttgtag---

upper sequence: GLYMA07G34030.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0011g04790.t01 (Vitis vinifera), 5'ss of exon 6
TTGGAAAGTTCTTGGAACTTAGCTTTTCTAACCATGCAACTGCAAATCGAGTTGCAACCTGTGGACATTCTTTGCAGAGGGATTGCCTCCGTTTTTATGGgtaaat-catccagacaaggaatcaccaatcaattttttgttatgtaatttgtgttggtcatcaatacttgaaaggtgacaaacaacctgatgtgtaacag
|||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||| ||||| |||||||| || ||||| ||||||||||| |||||||| || |    | |   | |||      |||||||| |  | |||    |||| |  | ||  ||  ||| ||| |  ||     | |   |        
TTGGAAAGTTCTTGGAGCTTAGCTTTTCAAACCATGCAACTGCTAATCGTGTTGCAACTTGTGGTCATTCTTTACAAAGGGACTGCCTCCGTTTCTATGGgtatatgccattaaatttgtaattcgatgtcaattttctaat-tgttgggtgtgattatgat-gattgttggaagctttcatttttcttacag--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24206057|gb|BU965310.1|BU965310
EST:     GTTGCAACCTGTGGACATTCTTTGCAGAGGGATTGCCTCCGTTTTTATGG                         GTATGGGAGCATGGTTGCTTTTTTCCGGTATTCCCCTATTGATATTCTTTC
genomic: GTTGCAACCTGTGGACATTCTTTGCAGAGGGATTGCCTCCGTTTTTATGGgtaaatcatc ... tgtgtaacagGTATGGGAGCATGGTTGCTTTTTTCCGGTATTCCCCTATTGATATTCTTTC