1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...atggttttactttatgacccaaaatatttttaactagcagtttcttggttttagtatatggttgttactcactttactttctccctttgtggttcttcagTCTGTTGACGTTATGGACTATTCTTTGCTGGTTGGAGTCGACGATGAGCGCAAGGAACTGGTTCTGGGGATCATTGATTTCATGAGACAATACACATGGG
species | Glycine max |
transcript | GLYMA07G34030.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CTAAGAGAATACTGGAAAGAGCTGTATGGAATGACACATCCTTTTTGGCG TCTGTTGACGTTATGGACTATTCTTTGCTGGTTGGAGTCGACGATGAGCGCEST: gi|208152453|gb|GD945204.1|GD945204
genomic: CTAAGAGAATACTGGAAAGAGCTGTATGGAATGACACATCCTTTTTGGCGgtaagcttta ... ggttcttcagTCTGTTGACGTTATGGACTATTCTTTGCTGGTTGGAGTCGACGATGAGCGC
EST: CTAAGAGAATACTGGAAAGAGCTGTATGGAATGACACATCCTTTTTGGCG TCTGTTGACGTTATGGACTATTCTTTGCTGGTTGGAGTCGACGATGAGCGCEST: gi|12773176|gb|BG238103.1|BG238103
genomic: CTAAGAGAATACTGGAAAGAGCTGTATGGAATGACACATCCTTTTTGGCGgtaagcttta ... ggttcttcagTCTGTTGACGTTATGGACTATTCTTTGCTGGTTGGAGTCGACGATGAGCGC
EST: CTAAGAGAATACTGGAAAGAGCTGTATGGAATGACACATCCTTTTTGGCG TCTGTTGACGTTATGGACTATTCTTTGCTGGTTGGAGTCGACGATGAGCGC
genomic: CTAAGAGAATACTGGAAAGAGCTGTATGGAATGACACATCCTTTTTGGCGgtaagcttta ... ggttcttcagTCTGTTGACGTTATGGACTATTCTTTGCTGGTTGGAGTCGACGATGAGCGC
tggttttagtatatggttgttactcactttactttctccctttgtggttcttcagTCTGTTGACGTTATGGACTATTCTTTGCTGGTTGGAGTCGACGATGAGCGCAAGGAACTGGTTCTGGGGATCATTGATTTCATGAGACAATACACATGGG
tactcac putative branch site (score: 1)
ctttactttctccctt CT-rich tract
ttagtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggttttactttatgacccaaaatatttttaactagcagtttcttggttttagtatatggttgttactcactttactttctccctttgtggttcttcagTCTGTTGACGTTATGGACTATTCTTTGCTGGTTGGAGTCGACGATGAGCGCAAGGAACTGGTTCTGGGGATCATTGATTTCATGAGACAATACACATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA