Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacccaactaattttgcattgtggaatctaaaccagGCGAGCCTAGTTGGGACAACCCTTGGGATCCTGGAAGTCCTGGGTGGCACATTGAATGCAGTGCAATGAGTGCTTGTTATTTAACTCATAAATTTGATAT

Basic information

species Glycine max
transcript GLYMA07G32200.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G32200.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os03g04960.4 (Oryza sativa), 3'ss of exon 3
-------------------------------------------------------gtaacccaactaattttgcattgtggaatctaaaccagGCGAGCCTAGTTGGGACAACCCTTGGGATCCTGGAAGTCCTGGGTGGCACATTGAATGCAGTGCAATGAGTGCTTGTTATTTAACTCATAAATTTGATAT
                                                        |        || | ||| |||  ||   ||||   |||||| |||   ||||| | ||| ||||  | ||| || || || ||||| ||||||||||||||||||||||||  |||||||   |             
gtaattttgatgttatgatattcatagatctcttgcacattgttactttctgcttatcttttctgtattattgtattcagGCTGCTAAGGAAGGCGAACCTTTCTGGGATAGCCCATGGGGCCGTGGTAGACCAGGATGGCATATTGAATGCAGTGCAATGAGTGCTCATTATTTAGGAC-------------

upper sequence: GLYMA07G32200.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G38830.1 (Arabidopsis thaliana), 3'ss of exon 4
---------------------------------------------------------------gtaacccaactaattttgcattgtggaatctaaaccagGCGAGCCTAGTTGGGACAACCCTTGGGATCCTGGAAGTCCTGGGTGGCACATTGAATGCAGTGCAATGAGTGCTTGTTATTTAACTCATAAATTTGATAT
                                                               | |     |  |   ||  ||   ||   | || || |  ||||| |||||||| | |||||||| ||| ||||| || || |||||||| || |||||||||||||||| |  |||| |  |||             
gtttgaatatcttttttctttttattatattcaatttgaggcttgcacagtatatgatgaagtgaagtttgaacataattctatgcagGCGGCAAAGCCTGATGAGCCAAGTTGGGAGAGCCCTTGGGGTCCAGGAAGACCAGGATGGCACATCGAGTGCAGTGCAATGAGTGTTCATTATCTGTCTC-------------

upper sequence: GLYMA07G32200.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv00s0265g00020.t01 (Vitis vinifera), 3'ss of exon 5
--------------------------------------gtaacccaactaattttgc--attgtggaatct---aaaccagGCGAGCCTAGTTGGGACAACCCTTGGGATCCTGGAAGTCCTGGGTGGCACATTGAATGCAGTGCAATGAGTGCTTGTTATTTAACTCATAAATTTGATAT
                                       |    |  ||||| || |  ||| || |  ||   || || || ||||| |||||||||| ||| |||| ||||||||| || || |||||||| || |||||||||||||||||   |||||| ||               
gtgagaaactgtcacaaatttcctgatatttatgctcatttttgcgcctaatatttccaattttgcagGCTGCAAAGCCTGGTGAGCCAAGTTGGGACAGCCCATGGGGTCCTGGAAGACCAGGATGGCACATAGAGTGCAGTGCAATGAGTGCACATTATTTGACCT-------------

upper sequence: GLYMA07G32200.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv03s0017g01640.t01 (Vitis vinifera), 3'ss of exon 4
--------------------------------------gtaacccaactaattttgc--attgtggaatct---aaaccagGCGAGCCTAGTTGGGACAACCCTTGGGATCCTGGAAGTCCTGGGTGGCACATTGAATGCAGTGCAATGAGTGCTTGTTATTTAACTCATAAATTTGATAT
                                       |   ||  |||||||| |  ||| || |  ||   || || |  ||||| |||||||||| ||| |||| ||||||||| || || |||||||| || |||||||||||||||||   |||||| ||               
gtgggcaactgtcacaaattgcctgatatttatgctcatttttcctcctaatttttccaattttgcagGCTGCAAAGCCTGATGAGCCAAGTTGGGACAGCCCATGGGGTCCTGGAAGACCGGGATGGCACATAGAGTGCAGTGCAATGAGTGCACATTATTTGACCT-------------

upper sequence: GLYMA07G32200.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S504_12V6.1 (Physcomitrella patens), 3'ss of exon 4
------------------------------------------------------------------------------------------------------------------------gtaacccaactaattttgcattgtggaat-ctaaaccagGCGAGCCTAGTTGGGACAACCCTTGGGATCCTGGAAGTCCTGGGTGGCACATTGAATGCAGTGCAATGAGTGCTTGTTATTTAACTCATAAATTTGATAT
                                                                                                                            | |   ||   ||   | |  || | | ||||| || ||||||  ||||||||  ||||||| ||||||  | || || |||||||||||||||||||| ||||||||     |||||  ||             
gtcagcgcccttgaaaatggtgagagaaaactcttctgtctgctgagttaggtcctagggaattagactaaatcttgtcctactaaagtgggtgttggttctcaaattttctctctctgaaggtcgctggtatcattttctcgcagAGTGCGAAACCCGGAGAGCCTGCTTGGGACAGTCCTTGGGGTCCTGGGCGCCCGGGCTGGCACATTGAATGCAGTGCTATGAGTGCGGAGCATTTAGGTC-------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaacccaactaattttgcattgtggaatctaaaccagGCGAGCCTAGTTGGGACAACCCTTGGGATCCTGGAAGTCCTGGGTGGCACATTGAATGCAGTGCAATGAGTGCTTGTTATTTAACTCATAAATTTGATAT
                                                         aactaatttt  TA-rich tract