1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGATTGGGATCCTCTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCCGACAATTTAGCAGCTCAAAGAGCCAGAGACTTTCATGTTGGATGgtaaacatctttaacatttgtttttaagaaaatagtatatgcactgactgtacacaggatttttacactttcaaccaatcacaaatcacaatatatgata...
species | Glycine max |
transcript | GLYMA07G11310.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAGGCCGACAATTTAGCAGCTCAAAGAGCCAGAGACTTTCATGTTGGATG GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAACAACCATTCAAAATATEST: gi|151405282|gb|EV275096.1|EV275096
genomic: AAGGCCGACAATTTAGCAGCTCAAAGAGCCAGAGACTTTCATGTTGGATGgtaaacatct ... aattgaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAACAACCATTCAAAATAT
EST: AAGGCCGACAATTTAGCAGCTCAAAGAGCCAGAGACTTTCATGTTGGATG GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAACAACCATTCAAAATATEST: gi|21994135|gb|BQ785663.1|BQ785663
genomic: AAGGCCGACAATTTAGCAGCTCAAAGAGCCAGAGACTTTCATGTTGGATGgtaaacatct ... aattgaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAACAACCATTCAAAATAT
EST: AAGGCCGACAATTTAGCAGCTCAAAGAGCCAGAGACTTTCATGTTGGATG GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAACAACCATTCAAAATATEST: gi|10237463|gb|BE806351.1|BE806351
genomic: AAGGCCGACAATTTAGCAGCTCAAAGAGCCAGAGACTTTCATGTTGGATGgtaaacatct ... aattgaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAACAACCATTCAAAATAT
EST: AGGCCGACAATTTAGCAGCTCAAAGAGCCAGAAGACTTTCATGTTGGATG GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAACAACCATTCAAAATATEST: gi|209698509|gb|BW656422.1|BW656422
genomic: AGGCCGACAATTTAGCAGCTCAAAGAGCCAGA-GACTTTCATGTTGGATGgtaaacatct ... aattgaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAACAACCATTCAAAATAT
EST: AGCTCAAAGAGCCAGAGACTTTCATGTTGGATG GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAACAACCATTCAAAATATEST: gi|192318424|gb|FK006544.1|FK006544
genomic: AGCTCAAAGAGCCAGAGACTTTCATGTTGGATGgtaaacatct ... aattgaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAACAACCATTCAAAATAT
EST: AAGGCCGACAATTTAGCAGCTCAAAGAGCCAGAGACTTTCATGTTGGATG GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAACAACCATTCAAAATAT
genomic: AAGGCCGACAATTTAGCAGCTCAAAGAGCCAGAGACTTTCATGTTGGATGgtaaacatct ... aattgaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAACAACCATTCAAAATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATTGGGATCCTCTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCCGACAATTTAGCAGCTCAAAGAGCCAGAGACTTTCATGTTGGATGgtaaacatctttaacatttgtttttaagaaaatagtatatgcactgactgtacacaggatttttacactttcaaccaatcacaaatcacaatatatgata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA