1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cagtttgtatgttcctatacatcaatgatgtgttgacaacgttgtctactgtactactatgtcaagagcagctttagtcaactttagaatttcgttgcagGTATCTAGCTCCGGAGTATGCATCAAGTGGTAAATTGACAGATAAATCAGATGTATATTCCTATGGCATCATGCTTTTAGAACTTATAACCGGACATCCA
species | Glycine max |
transcript | GLYMA06G08610.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AACGATAGTTGCATTAGTCACCTCACCACTCGAGTGATGGGAACCTTTGG GTATCTAGCTCCGGAGTATGCATCAAGTGGTAAATTGACAGATAAATCAGAEST: gi|51343582|gb|CO984315.1|CO984315
genomic: AACGATAGTTGCATTAGTCACCTCACCACTCGAGTGATGGGAACCTTTGGgtaagaccac ... ttcgttgcagGTATCTAGCTCCGGAGTATGCATCAAGTGGTAAATTGACAGATAAATCAGA
EST: AACGATAGTTGCATTAGTCACCTCACCACTCGAGTGATGGGAACCTTTGG GTATCTAGCTCCGGAGTATGCATCAAGTGGTAAATTGACAGATAAATCAGA
genomic: AACGATAGTTGCATTAGTCACCTCACCACTCGAGTGATGGGAACCTTTGGgtaagaccac ... ttcgttgcagGTATCTAGCTCCGGAGTATGCATCAAGTGGTAAATTGACAGATAAATCAGA
ctactgtactactatgtcaagagcagctttagtcaactttagaatttcgttgcagGTATCTAGCTCCGGAGTATGCATCAAGTGGTAAATTGACAGATAAATCAGATGTATATTCCTATGGCATCATGCTTTTAGAACTTATAACCGGACATCCA
tttcgtt CT-rich tract
tttagaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagtttgtatgttcctatacatcaatgatgtgttgacaacgttgtctactgtactactatgtcaagagcagctttagtcaactttagaatttcgttgcagGTATCTAGCTCCGGAGTATGCATCAAGTGGTAAATTGACAGATAAATCAGATGTATATTCCTATGGCATCATGCTTTTAGAACTTATAACCGGACATCCA
- - -tgtatgt
- - - - - - - - - - - - - - - tgttgac
- - - - - - - - - - - - - - - - - - - - - - tctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagctt