Sequence
atgc intronic sequence ATGC exonic sequenceTTACTTGGATTATCCCAGTCTCTGTCGCCTCTCGATGACCAATTCGTTGATGCGAAAGGCTGCGAATGATGATAATGCTTGGAAGGCCCTTTATCACAAGgtatttacatatattattactcaattctaattctcgtgcttcttttaactgttatcttatgctaaatagacacccaaaatcgtgaatgagtgactgttag...
Basic information
species | Glycine max |
transcript | GLYMA05G36770.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G36770.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G10925.1 (Arabidopsis thaliana), 5'ss of exon 2
TTACTTGGATTATCCCAGTCTCTGTCGCCTCTCGATGACCAATTCGTTGATGCGAAAGGCTGCGAATGATGATAATGCTTGGAAGGCCCTTTATCACAAGgtatttacatatatta-ttactcaattctaat--tctcgtgcttct----tttaactgttatcttatgctaaa-----tagacacccaaaa--tcgtgaatgagtgactgttag------------------------------------------------------
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TTACTTGGATTATCCCAGTCTCTGTCGCTTATCCATGACTAATTCCTTGATGAGGAAAGCTGCTAATGATGATAATGCTTGGAAAGCTCTTTATCACAAGgtaattagattcactaatcactcatttgtattagctttgtgtattggaaattcagaaatgattctaggttaaaagatgtgtattcttagcagtttctggattagtgtgtgttttcgtgaatggtgctattttgtttaatgcttctcttacttttttctcatgtgttag
upper sequence: GLYMA05G36770.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv09s0018g01810.t01 (Vitis vinifera), 5'ss of exon 1
TTACTTGGATTATCCCAGTCTCTGTCGCCTCTCGATGACCAATTCGTTGATGCGAAAGGCTGCGAATGATGATAATGCTTGGAAGGCCCTTTATCACAAGgtatttac---atatattattactcaattctaattctcgtgcttcttttaactgttatcttatgctaaatagacacccaaaatcgtgaatgagtgactgttag
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TTACTTGGATTATCCGAGTCTAAGCCGGCTTTCGATGACCAATTCGTTAATGCGAAAGGCTGCGAATGATGATAATGCATGGAAAGCGCTCTATTACAAGgtgatttctttgttttttgccatgcatgtttgcatttagaacttatttatgtttgtttctgttgaatttcgagtttcttgtggtgttattcaactaattt---
upper sequence: GLYMA05G36770.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv02s0025g01680.t01 (Vitis vinifera), 5'ss of exon 2
TTACTTGGATTATCCCAGTCTCTGTCGCCTCTCGATGACCAATTCGTTGATGCGAAAGGCTGCGAATGATGATAATGCTTGGAAGGCCCTTTATCACAAGgtatttac---atatattattactcaattctaattctcgtgcttcttttaactgttatcttatgctaaat----agacacccaaaatcgtgaatgagtgactgttag
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TTACTTGGATTATCCGAGTCTGTGCCGGCTTTCGATGACCAATTCGTTAATGCGGAAGGCTGCGAATGATGATAATGCATGGAAAGCGCTATATCACAAGgtgatttctttgttctttgccatgcatgtttgtattttgaacttattta---tgtttgtttctgttgaatttcgagtttcttgtggttttattcaactaattt----
upper sequence: GLYMA05G36770.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv00s0131g00330.t01 (Vitis vinifera), 5'ss of exon 1
TTACTTGGATTATCCCAGTCTCTGTCGCCTCTCGATGACCAATTCGTTGATGCGAAAGGCTGCGAATGATGATAATGCTTGGAAGGCCCTTTATCACAAGgtatttac---atatattattactcaattctaattctcgtgcttcttttaactgttatcttatgctaaatagacacccaaaatcgtgaatgagtgactgttag
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TTACTTGGATTATCTGAGTCTATGCCGGCTTTCGATGACCAATTCATTAATGTGGAAGTCTGCGAATGATGATAATGCATGGAAAGCGCTCTATCACAAGgtgatttctttgttctttgccatgcatgtttgtatttagaacttatttatgttggtttttgttgaatttcgagtttcttgtggtgttattcaactaattt---
upper sequence: GLYMA05G36770.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv16s0039g00850.t01 (Vitis vinifera), 5'ss of exon 1
TTACTTGGATTATCCCAGTCTCTGTCGCCTCTCGATGACCAATTCGTTGATGCGAAAGGCTGCGAATGATGATAATGCTTGGAAGGCCCTTTATCACAAGgtatttac---atatattattactcaattctaattctcgtgcttcttttaactgttatcttatgctaaatagacacccaaaatcgtgaatgagtgactgttag
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TTACTTGGATTATCCGAGTCTATGCCGGCTTTTGATGACCAATTCGTTAATGCGGAAGGCTGCGAATGATGATAATGCATGGAAAGCACTCTATCACAAGgtgatttctttgttctttgccatgcatgtttgtatttagaacttatttatgtttgtttctgttgaatttcgagtttcttgtggtgttattcaactaattt---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21887744|gb|BQ740957.1|BQ740957EST: TGCGAAAGGCTGCGAATGATGATAATGCTTGGAAGGCCCTTTATCACAAG GACTTCACGTTGGAACAAGATAGTGTTACGCCCACTAATGGGTGGAAGGCT
genomic: TGCGAAAGGCTGCGAATGATGATAATGCTTGGAAGGCCCTTTATCACAAGgtatttacat ... ctgggtttagGACTTCACGTTGGAACAAGATAGTGTTACGCCCACTAATGGGTGGAAGGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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TTACTTGGATTATCCCAGTCTCTGTCGCCTCTCGATGACCAATTCGTTGATGCGAAAGGCTGCGAATGATGATAATGCTTGGAAGGCCCTTTATCACAAGgtatttacatatattattactcaattctaattctcgtgcttcttttaactgttatcttatgctaaatagacacccaaaatcgtgaatgagtgactgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG