1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atttataaataaaattaatttccaaaacaaatcaaaattattttcaaattttaatgatttcaaacccaatttaacgaagcctgattgattggatcttcagCCACTGGGCGACCTGGGAACACTAGAAGCTAACGAAAAGGGTGAGGCCTTCTATAGTGGGGTCAAAGAAAAGCTGAGGGTGGCTGATCTTATTGGACGAT
species | Glycine max |
transcript | GLYMA05G04170.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAGCACTGGTAAAATGTTCAATCCGGTAAATGAGGAAAACAGTAAAGAG CCACTGGGCGACCTGGGAACACTAGAAGCTAACGAAAAGGGTGAGGCCTTCEST: gi|254323418|gb|GR835919.1|GR835919
genomic: CAAGCACTGGTAAAATGTTCAATCCGGTAAATGAGGAAAACAGTAAAGAGgtttgctttt ... ggatcttcagCCACTGGGCGACCTGGGAACACTAGAAGCTAACGAAAAGGGTGAGGCCTTC
EST: GGTAAATGAGGAAAACAGTAAAGAG CCACTGGGCGACCTGGGAACACTAGAAGCTAACGAAAAGGGTGAGGCCTTCEST: gi|192323242|gb|FK017408.1|FK017408
genomic: GGTAAATGAGGAAAACAGTAAAGAGgtttgctttt ... ggatcttcagCCACTGGGCGACCTGGGAACACTAGAAGCTAACGAAAAGGGTGAGGCCTTC
EST: CAAGCACTGGTAAAATGTTCAATCCGGTAAATGAGGAAAACAGTAAAGAG CCACTGGGCGACCTGGGAACACTAGAAGCTAACGAAAAGGGTGAGGCCTTCEST: gi|31560990|gb|CD486828.1|CD486828
genomic: CAAGCACTGGTAAAATGTTCAATCCGGTAAATGAGGAAAACAGTAAAGAGgtttgctttt ... ggatcttcagCCACTGGGCGACCTGGGAACACTAGAAGCTAACGAAAAGGGTGAGGCCTTC
EST: CAAGCACTGGTAAAATGTTCAATCCGGTAAATGAGGAAAACAGTAAAGAG CCACTGGGCGACCTGGGAACACTAGAAGCTAACGAAAAGGGTGAGGCCTTCEST: gi|12690694|gb|BG157030.1|BG157030
genomic: CAAGCACTGGTAAAATGTTCAATCCGGTAAATGAGGAAAACAGTAAAGAGgtttgctttt ... ggatcttcagCCACTGGGCGACCTGGGAACACTAGAAGCTAACGAAAAGGGTGAGGCCTTC
EST: CAAGCACTGGTAAAATGTTCAATCCGGTAAATGAGGAAAACAGTAAAGAG CCACTGGGCGACCTGGGAACACTAGAAGCTAACGAAAAGGGTGAGGCCTTCEST: gi|207841841|gb|GD814985.1|GD814985
genomic: CAAGCACTGGTAAAATGTTCAATCCGGTAAATGAGGAAAACAGTAAAGAGgtttgctttt ... ggatcttcagCCACTGGGCGACCTGGGAACACTAGAAGCTAACGAAAAGGGTGAGGCCTTC
EST: AAGCACTGGTTAAAATGTTCAATCCGGTAAATGAGGAAAACAGTAAAGAG CCACTGGGCGACCTGGGAACACTAGAAGCTAACGAAAAGGGTGAGGCCTTC
genomic: AAGCACTGG-TAAAATGTTCAATCCGGTAAATGAGGAAAACAGTAAAGAGgtttgctttt ... ggatcttcagCCACTGGGCGACCTGGGAACACTAGAAGCTAACGAAAAGGGTGAGGCCTTC
aaattttaatgatttcaaacccaatttaacgaagcctgattgattggatcttcagCCACTGGGCGACCTGGGAACACTAGAAGCTAACGAAAAGGGTGAGGCCTTCTATAGTGGGGTCAAAGAAAAGCTGAGGGTGGCTGATCTTATTGGACGAT
tcttc CT-rich tract
ttaatgatttcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttataaataaaattaatttccaaaacaaatcaaaattattttcaaattttaatgatttcaaacccaatttaacgaagcctgattgattggatcttcagCCACTGGGCGACCTGGGAACACTAGAAGCTAACGAAAAGGGTGAGGCCTTCTATAGTGGGGTCAAAGAAAAGCTGAGGGTGGCTGATCTTATTGGACGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - aaataaa
- - - - - - - - - - -ccaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcctga