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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaatctggactttggatgtttttgtgtgcttttgagaaaaaatcattacaaaaaattcctctcttcctaatgaacatgcacacaatgcttattcttgtcttgatatcaaatgttgcttgataacatttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG

Basic information

species Glycine max
transcript GLYMA05G03770.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G03770.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os02g01030.3 (Oryza sativa), 3'ss of exon 8
gtaagtaaatctggactttggatgtttttgtgtgcttttgagaaaaaatcattacaaaaaattcctctcttcctaatgaacatgcacacaatgcttattcttgtcttgatatcaaatgt-tgcttgataacatttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG
                                             || | |||  | ||    |  | ||   |  |   ||| |        |||    |     | |   || |||| || ||       ||   ||||||||||| |||||||| |||||| |||| || ||||||||||| |||||||||||||
-------------------------------------------gtaagtgatt-tagaattagctaccctcattggttttcattc--------cttgagatgacagtcactacacatgtatgtttttccctcttcaacagGACCCTGATCTGATGGCAGCATTTGGTGACCCTGAGGTTATGGCAGCTCTTCAAGATG

upper sequence: GLYMA05G03770.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G134806_T01 (Zea mays), 3'ss of exon 9
gtaagtaaatctggactttggatgtttttgtgtgcttttgagaaaaaatcattacaaaaaattcctctcttcctaatgaacatgcacacaatgcttattcttgtcttgatatcaaatgttgcttgataacatttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG-----
|||||| |   |   |  | | ||| ||  | || || ||        || ||        ||  ||   | || ||  ||||| |            |||  | ||  ||  |    ||||||  |    |||  ||||||||||| |||||||| ||||| ||||| || ||||| ||||| ||| | |||||||     
gtaagtga--ttaaccagttgctgtcttcct-tggttatgt-------tcgttt-------tttatccacttctgatacacatgaa------------tctcctttttgtacaatgatttgctttctt-tgtttaccagGACCCTGACCTGATGGCAGCATTCAGTGACCCAGAGGTCATGGCGGCTTTACAAGATGGTATG

upper sequence: GLYMA05G03770.1 (Glycine max), 3'ss of exon 9
lower sequence: AT4G22670.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagtaaatctggactttggatgtttttgtgtgcttttgagaaaaaatcattacaaaaaattcctctcttcctaatgaacatgcacacaatgcttattcttgtcttgatatcaaatgtt--gcttgataacatttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG
                                                        || |    || | |    | |    ||   || | |  ||    ||   |||| ||     | |  | ||||||    |   ||||| ||||| || ||| |||||||||| || || || || |||||||||||||||||||
------------------------------------------------------gtaagagcgactatttgtgaattaccaatatccagagtttttgaagttaaattgacattgtgagattggtttgatatttgtgagcagGATCCTGAGCTAATGACGGCATTTAGCGACCCTGAAGTCATGGCTGCTCTTCAAGATG

upper sequence: GLYMA05G03770.1 (Glycine max), 3'ss of exon 9
lower sequence: PP1S9_386V6.3 (Physcomitrella patens), 3'ss of exon 9
-------------------------gtaagtaaatctggactttggatgtttttgtgtgcttttgagaaaaaatcattacaa--aaaattcctctcttcctaatgaacatgcacacaatgcttattcttgtcttga------tatcaaatgttg----cttgataacatt----tctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG------------------------------------------
                          |   |    |    || | ||| | | |   | ||    |||    |    ||  |   | ||       || ||  || |   | |  |  ||||| ||  ||||| ||      |   |  | ||     || |  ||  ||    || |||||||| ||||| ||||| ||||||  |||||| || |||||||| |||||||||||||                                          
gtaagcattagcatagagcattaaaatgcattcgcccattctcttgatctatgtcgatcctacctagagctcaatggtattatcgatataataacttttctgttggatgcgaatgctgtgctt-tttgtgtctagaccgagttgcgacgttttaatgtctcgtcaaacttgtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTCAAGATGGTATGATTACTCTTTCGCTTAGAACTGTGCGATGTTTTTAAT

upper sequence: GLYMA05G03770.1 (Glycine max), 3'ss of exon 9
lower sequence: PP1S9_386V6.1 (Physcomitrella patens), 3'ss of exon 9
-------------------------gtaagtaaatctggactttggatgtttttgtgtgcttttgagaaaaaatcattacaa--aaaattcctctcttcctaatgaacatgcacacaatgcttattcttgtcttga------tatcaaatgttg----cttgataacatt----tctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG
                          |   |    |    || | ||| | | |   | ||    |||    |    ||  |   | ||       || ||  || |   | |  |  ||||| ||  ||||| ||      |   |  | ||     || |  ||  ||    || |||||||| ||||| ||||| ||||||  |||||| || |||||||| |||||||||||||
gtaagcattagcatagagcattaaaatgcattcgcccattctcttgatctatgtcgatcctacctagagctcaatggtattatcgatataataacttttctgttggatgcgaatgctgtgctt-tttgtgtctagaccgagttgcgacgttttaatgtctcgtcaaacttgtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTCAAGATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208079391|gb|GD877567.1|GD877567
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|193483098|gb|FK448435.1|FK448435
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|193540896|gb|FK496058.1|FK496058
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGACATTTAGTGATCCGGAGGTTATGGCTGCTCT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGG-CATTTAGTGATCCGGAGGTTATGGCTGCTCT
EST: gi|193537108|gb|FK498847.1|FK498847
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208312483|gb|GE110363.1|GE110363
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCCGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|193314938|gb|FK282110.1|FK282110
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATACCGGAGGTTATGGCTGCTCT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGAT-CCGGAGGTTATGGCTGCTCT
EST: gi|208329340|gb|GE128468.1|GE128468
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208200541|gb|GD995156.1|GD995156
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208259864|gb|GE059306.1|GE059306
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAGCTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208260275|gb|GE060641.1|GE060641
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|207796607|gb|GD770769.1|GD770769
EST:     AGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: AGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|193537897|gb|FK495072.1|FK495072
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|193396570|gb|FK363710.1|FK363710
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208333883|gb|GE129952.1|GE129952
EST:     ACATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGGACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: -CATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208224137|gb|GE026208.1|GE026208
EST:     GGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTTAGTGATCCGGAGGTTATGGCTGCTCT
genomic: GGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTT-AGTGATCCGGAGGTTATGGCTGCTCT
EST: gi|208184481|gb|GD983795.1|GD983795
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|193366907|gb|FK329073.1|FK329073
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|193558220|gb|FK514115.1|FK514115
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208145253|gb|GD942206.1|GD942206
EST:     CAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: CAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208138032|gb|GD938500.1|GD938500
EST:     CAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: CAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208252396|gb|GE047850.1|GE047850
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|193558760|gb|FK510757.1|FK510757
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCGAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|207833131|gb|GD801808.1|GD801808
EST:     GGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208032364|gb|GD828147.1|GD828147
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208026085|gb|GD825631.1|GD825631
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|207809905|gb|GD781909.1|GD781909
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|193616128|gb|FK566920.1|FK566920
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|193624434|gb|FK574314.1|FK574314
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208091187|gb|GD890940.1|GD890940
EST:     CATGCCTGGAGGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: CATGCCTGGA-GGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|193453738|gb|FK421138.1|FK421138
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|207782726|gb|GD752365.1|GD752365
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208226842|gb|GE027779.1|GE027779
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|207757237|gb|GD727619.1|GD727619
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|193567753|gb|FK526428.1|FK526428
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208204636|gb|GE001981.1|GE001981
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208222887|gb|GE027506.1|GE027506
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|193574189|gb|FK533049.1|FK533049
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|193370410|gb|FK334060.1|FK334060
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         A
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcag-
EST: gi|193370410|gb|FK334060.1|FK334060
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         A
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcag-
EST: gi|193558380|gb|FK513379.1|FK513379
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208265333|gb|GE064499.1|GE064499
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|193566488|gb|FK525009.1|FK525009
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|207815150|gb|GD787824.1|GD787824
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208142895|gb|GD942389.1|GD942389
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208191732|gb|GD991050.1|GD991050
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGGACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208197602|gb|GD999831.1|GD999831
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|193310461|gb|FK276289.1|FK276289
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|193561062|gb|FK517635.1|FK517635
EST:     CATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: CATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGC-AAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208136424|gb|GD940168.1|GD940168
EST:     GCATGCCTGGAGGGGTGCCTGAAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|207749232|gb|GD720062.1|GD720062
EST:     TTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: TTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|193528709|gb|FK485541.1|FK485541
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208237025|gb|GE034305.1|GE034305
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208205673|gb|GE006112.1|GE006112
EST:     AAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: AAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208100368|gb|GD898468.1|GD898468
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|207706922|gb|GD689010.1|GD689010
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGGTGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|193509996|gb|FK469364.1|FK469364
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|193467408|gb|FK432521.1|FK432521
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208041185|gb|GD840864.1|GD840864
EST:     GCCTAGGAAGGGGTAGACCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCCT-GG-AGGGGT-G-CCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|193727958|gb|FK666688.1|FK666688
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|193387409|gb|FK349620.1|FK349620
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208304500|gb|GE104371.1|GE104371
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|207782900|gb|GD754513.1|GD754513
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCTAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTT
EST: gi|208301818|gb|GE099384.1|GE099384
EST:     GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGT                         GACCCTGAACTGATGGCGGCATTTAGTGAT
genomic: GCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTgtaagtaaat ... catttctcagGACCCTGAACTGATGGCGGCATTTAGTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacacaatgcttattcttgtcttgatatcaaatgttgcttgataacatttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG
                                       tgataac  putative branch site (score: 2)
                                             catttctc  CT-rich tract
                        atatcaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtaaatctggactttggatgtttttgtgtgcttttgagaaaaaatcattacaaaaaattcctctcttcctaatgaacatgcacacaatgcttattcttgtcttgatatcaaatgttgcttgataacatttctcagGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG