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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggagacaccttgtttagttgtcttaattcatgtctatccaaatttcttatctttttggttttctattttctgggtgttcttttttaatgttagAAATGGATCAACAAGTTGAGAGGCAGAAGCGTAGCAAGGAGATGAAGAGGAAGAGTAGTAGTAAAGTGAACAAGCGCAACAAGTTAATGATATGTTGTCG

Basic information

species Glycine max
transcript GLYMA04G40110.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296913|gb|FG990259.1|FG990259
EST:     ATCTTGACGGCAATTTTGCTGGTTCCTCACCAAAAGTTCAAGACTTCAAG                         AAATGGATCAACAAGTTGAGAGGCAGAAGCGTAGCAAGGAGATGAAGAGGA
genomic: ATCTTGACGGCAATTTTGCTGGTTCCTCACCAAAAGTTCAAGACTTCAAGgtaaggagac ... ttaatgttagAAATGGATCAACAAGTTGAGAGGCAGAAGCGTAGCAAGGAGATGAAGAGGA
EST: gi|6914715|gb|AW396245.1|AW396245
EST:     ATCTTGACGGCAATTTTGCTGGTTCCTCACCAAAAGTTCAAGACTTCAAG                         AAATGGATCAACAAGTTGAGAGGCAGAAGCGTAGCAAGGAGATGAAGAGGA
genomic: ATCTTGACGGCAATTTTGCTGGTTCCTCACCAAAAGTTCAAGACTTCAAGgtaaggagac ... ttaatgttagAAATGGATCAACAAGTTGAGAGGCAGAAGCGTAGCAAGGAGATGAAGAGGA
EST: gi|298179664|gb|HO024879.1|HO024879
EST:     ATCTTGACGGCAATTTTGCTG-TTCCTCACCAAAAGTTCAAGACTTCAAG                         AAATGGATCAACAAGTTGAGAGGCAGAAGCGTAGCAAGGAGATGAGGAGGA
genomic: ATCTTGACGGCAATTTTGCTGGTTCCTCACCAAAAGTTCAAGACTTCAAGgtaaggagac ... ttaatgttagAAATGGATCAACAAGTTGAGAGGCAGAAGCGTAGCAAGGAGATGAAGAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaatttcttatctttttggttttctattttctgggtgttcttttttaatgttagAAATGGATCAACAAGTTGAGAGGCAGAAGCGTAGCAAGGAGATGAAGAGGAAGAGTAGTAGTAAAGTGAACAAGCGCAACAAGTTAATGATATGTTGTCG
                                           ttttaat  putative branch site (score: 3)
                                    tgttctttttt  CT-rich tract
                                      ttcttttttaatgtta  TA-rich tract