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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTCAACAAGGCCCTCGAGCAGCTCCAAGACGCCGTCGCCAAGAAAGATTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattccctttttctttttcttttttttttctttcgatttcgtctttcttttttttaatggcttactagatgataaattacggcgactgaaaatcga...

Basic information

species Glycine max
transcript GLYMA04G39930.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39930.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os05g25850.1 (Oryza sativa), 5'ss of exon 1
AACTTCAACAAGGCCCTCGAGCAGCTCCAAGACGCCGTCGCCAAGAAAGATTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgt----ccgattccctttttctttttcttttttttttctttcgatttcgt-ctttcttttttttaatggcttactagatgataaattacggcgactgaaaatcga
|||| |||||||||||||||||||||| | | |||||||||||||   ||  || ||||| ||||  | |||||| ||||||||||||||||||||||||||    || | ||||     | ||  |  ||  |    |   | |||| | |||||||||| ||  |    | |     |    ||   |||| | |        
AACTACAACAAGGCCCTCGAGCAGCTCGACGCCGCCGTCGCCAAGGGCGACGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaagtcccgccccccttaccccttcctcgcatacggctttctttctttctttttcttcgtcctgttcatcgcgggcgatgcgggcggcggggg-----

upper sequence: GLYMA04G39930.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G124455_T02 (Zea mays), 5'ss of exon 1
AACTTCAACAAGGCCCTCGAGCAGCTCCAAGACGCCGTCGCCAAGAAAGATTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccg-attccctttttctttttcttttttttttctttcgatttcgtctttcttttttttaatggcttactagatgata-aattacggcgactgaaaatcga
|||| ||||||||| || ||||||||| | |  ||||||||||||   ||  ||||||| |||||  ||||||||||||||||||||||||||||||| |||  | |    |  | |      |   |||  |   ||||||   |    |   |    |  |  |   | |  |  |   ||    | |   ||   |   
AACTACAACAAGGCGCTGGAGCAGCTCGACGCTGCCGTCGCCAAGGGCGACGCCTCCGCTGTCGTCCAGCTCCAGGGCGCCATCAAGTTCAACGGCGGCGgtgagtaacggccctgtgcggggcgaatttgatgggttcgatgggggggcttagtgcgcttttctccccccatctcgtgtgatctgagtgcgagagggtt--

upper sequence: GLYMA04G39930.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G059991_T01 (Zea mays), 5'ss of exon 1
AACTTCAACAAGGCCCTCGAGCAGCTCCAAGACGCCGTCGCCAAGAAAGATTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgt---ccgattccctttttctttttcttttttttttctttcgatttcgtctttcttttttttaatggcttactagatgataaattacggcgactgaaaatcga
|||| ||||||||| || ||||||||  |    |||||| |||||   ||  ||||||| |||||  |||| |||||||||||||||||||||||||| |||    |  | |||| |      | |   | | |  | |||        | | |||||| ||| |   ||    ||| || |  |  |  |   |||  |   
AACTACAACAAGGCGCTGGAGCAGCTTGACACTGCCGTCTCCAAGGGCGACGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcactgccctgtactcgctccacatctatccccttcttgggtaccgtgctttttcttatt---ttgggggattattatctgagcggggcgaattttat

upper sequence: GLYMA04G39930.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0067g02990.t01 (Vitis vinifera), 5'ss of exon 1
AACTTCAACAAGGCCCTCGAGCAGCTCCAAGACGCCGTCGCCAAGAAAGATTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattccctt-tttctttttcttttttttt---tctttcgatttcgtctttct--tttttttaatggcttactagatgataaattacggcgactgaaaatcga
|||| |||||| ||||| ||||||||||| || ||| | |  |||   ||||| ||  | || || ||| | ||||||||||||||||||||||||||||||   |||| ||| ||||| | |  ||||  ||   | ||  | |||  ||  | |  | ||||||     ||    | || | |||    | || |  |      
AACTACAACAAAGCCCTAGAGCAGCTCCATGAAGCCATGGAAAAGGGCGATTCATCTACGGTTGTCAAGTTGCAGGGCGCCATCAAGTTCAACGGCGGAGgtttaattctcttgtttctctctagttttagttcgattttctgttttaatcggtgtggtgtttttatcaaattttgtggtggtgaatatttgggatttta------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15337599|gb|BI498255.1|BI498255
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAA-TCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|298183638|gb|HO028851.1|HO028851
EST:     TTCCTCCGCCGTCGTTAAGCTCCTGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGTGAA
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGTGAA
EST: gi|4313704|gb|AI460823.1|AI460823
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGGAAAATCTAGCTTCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|10233755|gb|BE802643.1|BE802643
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|298197610|gb|HO045089.1|HO045089
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|20076003|gb|BQ094786.1|BQ094786
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|18692743|gb|BM521591.1|BM521591
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|6070236|gb|AW099772.1|AW099772
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|16347621|gb|BI973216.1|BI973216
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|298173808|gb|HO017144.1|HO017144
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGCCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|298181231|gb|HO022670.1|HO022670
EST:     TTCCTCCTCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|213608229|gb|DB970826.1|DB970826
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|298165022|gb|HO011071.1|HO011071
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|23730997|gb|BU763608.1|BU763608
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|298173236|gb|HO020220.1|HO020220
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|19347357|gb|BM892237.1|BM892237
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|7685971|gb|AW756619.1|AW756619
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|298174724|gb|HO014755.1|HO014755
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGCTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|298183088|gb|HO028351.1|HO028351
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|298166785|gb|HO010224.1|HO010224
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|120532869|gb|EH261002.1|EH261002
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|8826470|gb|BE210200.1|BE210200
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|298191328|gb|HO038807.1|HO038807
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|298164553|gb|HO014198.1|HO014198
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|213617768|gb|DB959380.1|DB959380
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|298195572|gb|HO043963.1|HO043963
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|209696790|gb|BW680411.1|BW680411
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|213587591|gb|DB969732.1|DB969732
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|298185168|gb|HO030381.1|HO030381
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|6566815|gb|AW234447.1|AW234447
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT
EST: gi|4313692|gb|AI460811.1|AI460811
EST:     TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAG                         GTCACGTCAACCATTCTANTTTCTGGAAAAATCTAGCTCCTGTTCGT
genomic: TTCCTCCGCCGTCGTTAAGCTCCAGGGCGCCATCAAGTTCAACGGCGGAGgtccgattcc ... tttattgcagGTCACGTCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGT