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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCCAAATCGCAAACCCCTTTTGCTCAATTGAGTCAATTCTCTCCCTAAGTTCCTCTGTCGGCGTCTGGGTGGGTAAAAGTTGTTGTTTTGTCTTCTGGgtatggctgattctgctgtttgatgttttcttcttcttgttgtgattcgtgtgttgtctgattcgccttctgatgttttgaaattgggaatgctttttttttcttgttggttttggtttttcag

Basic information

species Glycine max
transcript GLYMA04G39920.4
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6724676|gb|AW309009.1|AW309009
EST:     GTTCCTCTGTCGGCGTCTGGGTGGGTAAAAGTTGTTGTTTTGTCTTCTGG                         GTTTTGGAGCAA-GACAAAAGATGGGTGAGGGAGAACGTTTCCAGCTTGGG
genomic: GTTCCTCTGTCGGCGTCTGGGTGGGTAAAAGTTGTTGTTTTGTCTTCTGGgtatggctga ... ggtttttcagGTTTTGGAGCAAAGACAAAAGATGGGTGAGGGAGAACGTTTCCAGCTTGGG
EST: gi|8282895|gb|BE020456.1|BE020456
EST:     GTTCCTCTGTCGGCGTCTGGGTGGGTAAAAGTTGTTGTTTTGTCTTCTGG                         GTTTTGGAGCAAAGACAAAAGATGGGTGAGGGAGAACGTTTCCAGCTTGGG
genomic: GTTCCTCTGTCGGCGTCTGGGTGGGTAAAAGTTGTTGTTTTGTCTTCTGGgtatggctga ... ggtttttcagGTTTTGGAGCAAAGACAAAAGATGGGTGAGGGAGAACGTTTCCAGCTTGGG
EST: gi|213597097|gb|DB968178.1|DB968178
EST:     GTTCCTCTGTCGGCGTCTGGGTGGGTAAAAGTTGTTGTTTTGTCTTCTGG                         GTTTTGGAGCAAAGACAAAAGATGGGTGAGGGAGAACGTTTCCAGCTTGGG
genomic: GTTCCTCTGTCGGCGTCTGGGTGGGTAAAAGTTGTTGTTTTGTCTTCTGGgtatggctga ... ggtttttcagGTTTTGGAGCAAAGACAAAAGATGGGTGAGGGAGAACGTTTCCAGCTTGGG