Sequence
atgc intronic sequence ATGC exonic sequence...atgtttaaagctcttgaattctctaggccaggagtgttttgacatgatgatatgtgctttttgttagttgagtgtaatatcaatgtatctgtttgcacagAGAGCACACCCAGGAGGTACTCCCCATTATCATTCAGCCAGAGAATAAGAGTTGCTGTTGATGTTGCTCGATGTCTTCTATACCTTCATGATCGAGGACT
Basic information
species | Glycine max |
transcript | GLYMA04G39820.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17519179|gb|BM188221.1|BM188221EST: CTTGGCTCTTCATCTCTATG AGAGCACACCCAGGAGGTACTCCCCATTATCATTCAGCCAGAGAATAAGAG
genomic: CTTGGCTCTTCATCTCTATGgtaatagtta ... gtttgcacagAGAGCACACCCAGGAGGTACTCCCCATTATCATTCAGCCAGAGAATAAGAG
EST:
gi|13480346|gb|BG509689.1|BG509689EST: TCTTTTAGCTGACTATATACATGGGGACAACTTGGCTCTTCATCTCTATG AGAGCACACCCAGGAGGTACTNCCCATTATCATTCAGCCAGAAAATAAGAG
genomic: TCTTTTAGCTGACTATATACATGGGGACAACTTGGCTCTTCATCTCTATGgtaatagtta ... gtttgcacagAGAGCACACCCAGGAGGTACTCCCCATTATCATTCAGCCAGAGAATAAGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatgatatgtgctttttgttagttgagtgtaatatcaatgtatctgtttgcacagAGAGCACACCCAGGAGGTACTCCCCATTATCATTCAGCCAGAGAATAAGAGTTGCTGTTGATGTTGCTCGATGTCTTCTATACCTTCATGATCGAGGACT
tctgttt CT-rich tract
taatatcaatgtat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgtttaaagctcttgaattctctaggccaggagtgttttgacatgatgatatgtgctttttgttagttgagtgtaatatcaatgtatctgtttgcacagAGAGCACACCCAGGAGGTACTCCCCATTATCATTCAGCCAGAGAATAAGAGTTGCTGTTGATGTTGCTCGATGTCTTCTATACCTTCATGATCGAGGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - tgaattc
- - - - - - - - - - - ctaggcc
- - - - - - - - - - - - - - - -gagtgtt
- - - - - - - - - - - - - - - - - - - -tgacatg
- - - - - - - - - - - - - - - - - - - - - - - -tgatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgagtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgta