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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagccacttcctgcttcttctctcttctgaattcattttaatttgctcttgcctaactaacattcctgagagctaaaatcatatctacattttgcatcactgatacttatttgtgcctatgtatttctcagGCGCTCGAACAGATCAAAGGCTTTCTTATGGGTGAAGATGGCTGTTAAGCACGTGCTAGCACAATCTTCAACACAAACATGCTTTAGCATGGCAATGTGG

Basic information

species Glycine max
transcript GLYMA04G39710.1
intron # 7
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcatatctacattttgcatcactgatacttatttgtgcctatgtatttctcagGCGCTCGAACAGATCAAAGGCTTTCTTATGGGTGAAGATGGCTGTTAAGCACGTGCTAGCACAATCTTCAACACAAACATGCTTTAGCATGGCAATGTGG
                     cactgat  putative branch site (score: 3)
                                             tatttctc  putative PPT
                          atacttattt  TA-rich tract