1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttcagcttaattaattaattattccattaaaatttgttaagtttaatagataataaattctagttttcaaattaactatcaatcgatgatgatgatgcagGAACTACTACAAGTGTTCAGGTGAAGGATGCAATGTGAAGAAAAGGGTGGAAAGAGACAGGGATGACTCGAACTATGTTTTAACAACGTACGACGGTGTC
species | Glycine max |
transcript | GLYMA04G39650.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAAAGAAGACAGTGAAGAACAATCCCAACCCAAG GAACTACTACAAGTGTTCAGGTGAAGGATGCAATGTGAAGAAAAGGGTGGAEST: gi|10709704|gb|BF009428.1|BF009428
genomic: GGAAAGAAGACAGTGAAGAACAATCCCAACCCAAGgtaataaata ... gatgatgcagGAACTACTACAAGTGTTCAGGTGAAGGATGCAATGTGAAGAAAAGGGTGGA
EST: AAATGGAGGAAATACGGAAAGAAGACAGTGAAGAACAATCCCAACCCAAG GAACTACTACAAGTGTTCAGGTGAAGGATGCAATGTGAAGAAAAGGGTGGA
genomic: AAATGGAGGAAATACGGAAAGAAGACAGTGAAGAACAATCCCAACCCAAGgtaataaata ... gatgatgcagGAACTACTACAAGTGTTCAGGTGAAGGATGCAATGTGAAGAAAAGGGTGGA
atagataataaattctagttttcaaattaactatcaatcgatgatgatgatgcagGAACTACTACAAGTGTTCAGGTGAAGGATGCAATGTGAAGAAAAGGGTGGAAAGAGACAGGGATGACTCGAACTATGTTTTAACAACGTACGACGGTGTC
aattaac putative branch site (score: 2)
taataaattctagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcagcttaattaattaattattccattaaaatttgttaagtttaatagataataaattctagttttcaaattaactatcaatcgatgatgatgatgcagGAACTACTACAAGTGTTCAGGTGAAGGATGCAATGTGAAGAAAAGGGTGGAAAGAGACAGGGATGACTCGAACTATGTTTTAACAACGTACGACGGTGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - -ccattaa