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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaactgttgatccatcagtttggggtggggctgttttaaattgttctagtaccagacaagtttcctttcctctttctctgcttatctgctaccaatttaggataaaccataagcaatatcttttagccattaataacttaacaagcatagctttgtgtgctttgcagGGTAATTTGGAGGAGGGCTTAAAAAGATTTCAAGAATTGATTGATCAAAATCCTCGAGATTTTAGGCCTTATATTTGCCAG

Basic information

species Glycine max
transcript GLYMA04G39630.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15285275|gb|BI469166.1|BI469166
EST:     CTGAGGAGAGAAATATAAGAATCTTAATTGCACAAATGCATGTTGTCCAG                         GGTAATTTGGAGGAGGGCTTAAAAAGATTTCAAGAATTGATTGATCAAAAT
genomic: CTGAGGAGAGAAATATAAGAATCTTAATTGCACAAATGCATGTTGTCCAGgtgaactgtt ... tgctttgcagGGTAATTTGGAGGAGGGCTTAAAAAGATTTCAAGAATTGATTGATCAAAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaatatcttttagccattaataacttaacaagcatagctttgtgtgctttgcagGGTAATTTGGAGGAGGGCTTAAAAAGATTTCAAGAATTGATTGATCAAAATCCTCGAGATTTTAGGCCTTATATTTGCCAG
                attaataacttaacaa  TA-rich tract