Sequence
atgc intronic sequence ATGC exonic sequence...tatttaatcctgtcaaagttataattatatatactgcctctacaagtacagtatatataaaattctctaatgatgcgttttggttacactgcatgtgtagAAGCTACTACCGTTGCACACAAGATAACTGTCGAGTAAAGAAACGCGTGGAGCGCTTGGCAGAGGATCCAAGGATGGTGATAACCACATATGAAGGGAGA
Basic information
species | Glycine max |
transcript | GLYMA04G39620.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21676335|gb|BQ628686.1|BQ628686EST: AAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAACACACAACACCCGAG AAGCTACTACCGTTGCACACAAGATAACTGTCGAGTAAAGAAACGCGTGGA
genomic: AAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAACACACAACACCCGAGgtataccccc ... gcatgtgtagAAGCTACTACCGTTGCACACAAGATAACTGTCGAGTAAAGAAACGCGTGGA
EST:
gi|11412268|gb|BF424279.1|BF424279EST: AAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAACACACAACACCCGAG AAGCTACTACCGTTGCACACAAGATAACTGTCGAGTAAAGAAACGCGTGGA
genomic: AAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAACACACAACACCCGAGgtataccccc ... gcatgtgtagAAGCTACTACCGTTGCACACAAGATAACTGTCGAGTAAAGAAACGCGTGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtacagtatatataaaattctctaatgatgcgttttggttacactgcatgtgtagAAGCTACTACCGTTGCACACAAGATAACTGTCGAGTAAAGAAACGCGTGGAGCGCTTGGCAGAGGATCCAAGGATGGTGATAACCACATATGAAGGGAGA
ctctaat putative branch site (score: 3)
tatatataaaattctc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatttaatcctgtcaaagttataattatatatactgcctctacaagtacagtatatataaaattctctaatgatgcgttttggttacactgcatgtgtagAAGCTACTACCGTTGCACACAAGATAACTGTCGAGTAAAGAAACGCGTGGAGCGCTTGGCAGAGGATCCAAGGATGGTGATAACCACATATGAAGGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - cctgtca
- - - - - - - - - - - - - - - - - tgcctct
- - - - - - - - - - - - - - - - - - - - - caagtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgatgc