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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCCAGTATCTGATATAATCAAATTTGTCTTATTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggcttttagtagcctataacattttgaaccgtctttataataaactaaagataaatatttataataattcttccttgaaattaaattgtcag

Basic information

species Glycine max
transcript GLYMA04G39590.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39590.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g40090.4 (Oryza sativa), 5'ss of exon 3
TCTTCCAGTATCTGATATAATCAAATTTGTCTTATTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggcttttagtagcctataacattttgaaccgtctttataataaactaaagataaatatttataataattcttccttgaaattaaattgtcag
| | ||| |  | ||  |  | ||||| ||||| |||||||| || || ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||      |    |||||  | |||   | |||      |    ||| |||  |    | |||   ||||    |   |    ||| |              
TTTACCATTGCCAGAACTCGTTAAATTCGTCTTTTTTGCAAACTTATCAATTGTTGGGATGAATGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgggaagagtaattttaa-atccttctatatt------caatgttagaatggagggcacatactaattttcgtttcatgcctcttcag-------------

upper sequence: GLYMA04G39590.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g12490.1 (Oryza sativa), 5'ss of exon 3
TCTTCCAGTATCTGATATAATCAAATTTGTCTTATTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggcttttagtagcctataacattttgaaccgtctttataataaactaaagataaatattta-taataattcttccttgaaattaaattgtcag
  | |||||  | ||  |||| ||||||||||| ||||||||  | || ||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||| |    |||    | |||  ||| |||  ||      |   |||| |||    |  | |||   ||||  |  | || | |  || |              
CTTACCAGTGCCAGAACTAATAAAATTTGTCTTTTTTGCAAACCTATCAATTGTTGGGATGAATGTTAGTTTGATGTGGAACTCTGTTGGATTCTACCAGgtgaaga-aagtaactaagt--cctttaatgtt------cacttttagaattggatgcatatactaatttgctcctcatgcctttttcag-------------

upper sequence: GLYMA04G39590.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os12g05780.3 (Oryza sativa), 5'ss of exon 3
TCTTCCAGTATCTGATATAATCAAATTTGTCTTATTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggc--ttttagtagcctataacattttgaaccgtctttataataaactaaagataaatatttataataattcttccttgaaattaaattgtcag
  | ||| || | ||| | || || |||||  | ||| | || || || |||||||| ||||||||||| || |||||||||||||| || || |||||||| |    | | |  || |||||||     | |||       | ||||| ||    | |    |||| |   ||  |  ||||||| |  |             
CTTACCAATACCAGATCTGATTAAGTTTGTGATCTTTTCGAACTTGTCAATTGTTGGAATGAATGTGAGCTTGATGTGGAACTCTGTGGGATTTTATCAGgttagcaaaggaccgttctagtagct----agattccatcatggcttta-aactttcaactactaaaca---atcctttttcttcccttcag------------

upper sequence: GLYMA04G39590.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os12g05830.1 (Oryza sativa), 5'ss of exon 3
TCTTCCAGTATCTGATATAATCAAATTTGTCTTATTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggcttttagtagcctataacattttgaaccgtctttataataaactaaagataaatatttataataattcttccttgaaattaaattgtcag
  | ||| |  | ||| | || ||||||||  | ||| | || || || |||||||| ||||||||||| || |||||||||||||| || || |||||||| |    | |    ||    ||     | |||       | ||||  | |     ||   | || |  || || ||| |||   |    || |        
CTTACCACTGCCAGATCTGATTAAATTTGTGATCTTTTCGAACTTGTCGATTGTTGGAATGAATGTGAGCTTGATGTGGAACTCTGTGGGGTTTTATCAGgttagcaaaggatggtt--ctgctagctaaattccatcatggctttgaactt--tcaagtttcaaaagcta-aagaatccttttgttctcttcag-------

upper sequence: GLYMA04G39590.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G147446_T01 (Zea mays), 5'ss of exon 3
TCTTCCAGTATCTGATATAATCAAATTTGTCTTATTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggcttttagtagcctataacattttgaaccgtctttataataaactaaagataaatatttataataattcttccttgaaattaaattgtcag
  | ||  || | ||| || | ||||||||  ||||| | || || || |||||||||||||||||||| || ||||||||||||||||| || ||||||||   |  |    |||||||||| |   | ||| ||   || | ||  |      | || ||  ||||| ||  || | | |   | |              
CTTACCCCTAGCAGATCTAGTTAAATTTGTGATATTTTCGAACTTGTCAATTGTTGGGATGAATGTGAGCTTGATGTGGAACTCTGTTGGCTTTTATCAGgttggtg-agattttttagtagc-tgctatattatg---cgaccttgaatcg---ttaacatctatattcattttattcccttgctcag-------------

upper sequence: GLYMA04G39590.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G089630_T04 (Zea mays), 5'ss of exon 3
TCTTCCAGTATCTGATATAATCAAATTTGTCTTATTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggcttttagtagcctataacattttgaaccgtctttataataaactaaagataaatatttataataattcttccttgaaattaaattgtcag
||| ||  || ||||  || | ||||| | ||| ||||| ||  | || ||||||||||||||||| || || ||||||||||||||||| |||||||||||      |     ||   ||  ||||||     |  | ||   ||| | |    ||  ||    | | | |  |   | || |                  
TCTACCGTTACCTGAACTAGTAAAATTCGCCTTTTTTGCGAACCTGTCTATTGTTGGGATGAATGTAAGCTTGATGTGGAACTCTGTTGGATTCTATCAGgtgcagacagaaacttcgatattctataag----tatatcggaattaaacttgtatactgacgc-tgtctgtcttgcctttttcag----------------

upper sequence: GLYMA04G39590.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G071378_T02 (Zea mays), 5'ss of exon 3
TCTTCCAGTATCTGATATAATCAAATTTGTCTTATTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggcttttagtagcctataacattttgaaccgtctttataataaactaaagataaatatttataataattcttccttgaaattaaattgtcag
  | ||  || | ||| || | ||||||||  ||||| | || || || |||||||||||||||||||| || |||||||||||||| || || ||||||||   |   |   ||||||||||   ||  || |  ||||   |  ||  | ||| |  ||     ||| ||  || | | |   | |              
CTTACCCCTAGCAGATCTAGTTAAATTTGTGATATTTTCGAACTTGTCAATTGTTGGGATGAATGTGAGCTTGATGTGGAACTCTGTGGGCTTTTATCAGgttggt--gaaatttttagtagctgctataatatgcaacc--ttaaattgttaacaactga-----attcattctattcccttgctcag-------------

upper sequence: GLYMA04G39590.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 2
TCTTCCAGTATCTGATATAATCAAATTTGTCTTATTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggcttttagtagcctataa-cattttgaaccgtctttataataaactaaagataaatatttataataattcttccttgaaattaaattgtcag
| | ||| || | ||  || | || |||| ||| ||||||||  | || || || || ||||| || ||||| ||||||||||||||||| ||||||||||| |    |     ||| |||  ||||||  || ||| |  ||       ||| ||||| | |   ||| |         |||    |               
TTTACCATTACCAGAACTAGTAAAGTTTGCCTTTTTTGCAAACCTGTCGATCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcagaaactttggtattctataagtatattgga--gttaaacgtatatactaatgctgtgtatctt-----gcccttttcag---------------

upper sequence: GLYMA04G39590.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0031g01860.t01 (Vitis vinifera), 5'ss of exon 3
TCTTCCAGTATCTGATATAATCAAATTTGTCTTATTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggcttttagtagcctataacattttgaaccgtctttataataaactaaagataaatatttataataattcttccttgaaattaaattgtcag
||| |||||||||||  |  | | |||||| || ||||||||||| || |||||||| ||||| ||||||||||||||||||||||| || ||||||||||| | |||  ||   |    |   | |    |  |    |     |||  |     |||| || | | ||||  |  ||||  ||| ||| |    ||||||
TCTACCAGTATCTGAGCTTCTGAGATTTGTTTTGTTTGCAAATTTGTCAATTGTTGGAATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGgtcagttttgggaactgctgactttttgttctccttttgctctcatattttttttcaaagttaca-agttatgttctttct--cttcaaactttgatgtcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19934841|gb|BQ079871.1|BQ079871
EST:     TTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAG                         ATTGCTAAGCTGAGCATGATTCCAGTATCTTGCTTCCTGGAGGTTGTCTTG
genomic: TTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaa ... aaattgtcagATTGCTAAGCTGAGCATGATTCCAGTATCTTGCTTCCTGGAGGTTGTCTTG