1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gccttggtgctgcattcttttgatgcctacttcctgatgatgtttgtgtgctgatcctaattttttgttgtcttatgatggtttctctttatccttgaagGTATTATTCCCATAAAAATGATTATCTTGAAATTTGCCGATGCTACAAGGCAATATATGAGATTCCATCTGTCAAAGAAAATCCTGCCGAGTGGATTCCA
species | Glycine max |
transcript | GLYMA04G39520.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATACCATCTCTACCGGAGTTGAAGCGAATCTACTATGAACTAATGATTCG GTATTATTCCCATAAAAATGATAATC-TGAAATTTTGCCGATGCTACAAGGEST: gi|192297411|gb|FG990689.1|FG990689
genomic: ATACCATCTCTACCGGAGTTGAAGCGAATCTACTATGAACTAATGATTCGgtaaccaatt ... atccttgaagGTATTATTCCCATAAAAATGATTATCTTGAAA-TTTGCCGATGCTACAAGG
EST: ATACCATCTCTACCGGAGTTGAAGCGAATCTACTATGAACTAATGATTCG GTATTATTCCCATAAAAATGATTATCTTGAAATTTGCCGATGCTACA-GGCEST: gi|7478704|gb|AW666372.1|AW666372
genomic: ATACCATCTCTACCGGAGTTGAAGCGAATCTACTATGAACTAATGATTCGgtaaccaatt ... atccttgaagGTATTATTCCCATAAAAATGATTATCTTGAAATTTGCCGATGCTACAAGGC
EST: ATACCATCTCTACCGGAGTTGAAGCGAATCTACTATGAACTAATGATTCG GTATTATTCCCATAAAAATGATTATCTTGAAATTTGCCGATGCTACAAGGCEST: gi|6724616|gb|AW309071.1|AW309071
genomic: ATACCATCTCTACCGGAGTTGAAGCGAATCTACTATGAACTAATGATTCGgtaaccaatt ... atccttgaagGTATTATTCCCATAAAAATGATTATCTTGAAATTTGCCGATGCTACAAGGC
EST: ATACCATCTCTACCGGAGTTGAAGCGAATCTACTATGAACTAATGATTCG GTATTATTCCCATAAAAATGATTATCTTGAAATTTGCCGATGCTACAAGGC
genomic: ATACCATCTCTACCGGAGTTGAAGCGAATCTACTATGAACTAATGATTCGgtaaccaatt ... atccttgaagGTATTATTCCCATAAAAATGATTATCTTGAAATTTGCCGATGCTACAAGGC
gtgtgctgatcctaattttttgttgtcttatgatggtttctctttatccttgaagGTATTATTCCCATAAAAATGATTATCTTGAAATTTGCCGATGCTACAAGGCAATATATGAGATTCCATCTGTCAAAGAAAATCCTGCCGAGTGGATTCCA
tcctaat putative branch site (score: 2)
tttctctttatcctt putative PPT
taattttttgttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccttggtgctgcattcttttgatgcctacttcctgatgatgtttgtgtgctgatcctaattttttgttgtcttatgatggtttctctttatccttgaagGTATTATTCCCATAAAAATGATTATCTTGAAATTTGCCGATGCTACAAGGCAATATATGAGATTCCATCTGTCAAAGAAAATCCTGCCGAGTGGATTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - tggtgct
- - - - - -gcattct
- - - - - - - - - - tgatgcc
- - - - - - - - - - - - - - - - cctgatg
- - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - ctgatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatggtt